CATH Domain: 1ibyA00 XML data for domain: 1ibyA00

Molscript image for 1ibyA00
1ibyA00
PDB coordinates for domain 1ibyA00

PDB 1iby, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.28
2.60.40.420.28.1
2.60.40.420.28.1.1
2.60.40.420.28.1.1.1
2.60.40.420.28.1.1.1.1

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Segment boundaries for domain 1ibyA00

Chopping figure for domain 1ibyA00
DomainStart PDB ResidueStop PDB Residue
1ibyA00 1 112

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.60.40.420.28.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sddB02 82.74 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 10 83 3.12 3.75
1kdjA00 80.34 Identical protein bindingPlastocyaninDryopteris crassirhizoma 2.60.40.420 102 15 77 2.80 3.60
2j5wA02 80.17 Ferroxidase activityChaperone bindingExtracellular spaceCeruloplasmin [EC:1.16.3.1]Porphyrin and chlorophyll metabolism 2.60.40.420 150 12 74 3.60 4.82
1cyxA00 78.72 Oxidative phosphorylationMetabolic pathwaysIntegral to plasma membraneOxidoreduction-driven active transmembrane transporter activityEscherichia coli K-12 2.60.40.420 158 13 56 2.16 3.83
1ws8A00 76.38 MavicyaninCucurbita pepo 2.60.40.420 104 5 75 3.49 4.60
1v10A03 73.78 LaccaseRigidoporus microporus 2.60.40.420 181 10 51 2.19 4.22
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ibyA00
EHNFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKT
ISFTADKAGAFTIWCQLHPKNIHLPGTLNVVE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ibyA00
EHNFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKT
ISFTADKAGAFTIWCQLHPKNIHLPGTLNVVE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"