CATH Domain: 1i8dC02 XML data for domain: 1i8dC02

Molscript image for 1i8dC02
1i8dC02
PDB coordinates for domain 1i8dC02

PDB 1i8d, Chain C, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.20 Gene3D
2.40.30.20.3
2.40.30.20.3.1
2.40.30.20.3.1.1
2.40.30.20.3.1.1.1
2.40.30.20.3.1.1.1.1

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Segment boundaries for domain 1i8dC02

Chopping figure for domain 1i8dC02
DomainStart PDB ResidueStop PDB Residue
1i8dC01 1 89
1i8dC02 102 199

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.30.20.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kzlA02 90.86 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 35 87 1.22 1.40
1i8dA01 89.40 Riboflavin metabolismMetabolic pathwaysRiboflavin synthase activityRiboflavin synthase alpha chain [EC:2.5.1.9]Riboflavin synthase alpha chain 2.40.30.20 89 21 84 1.08 1.28
3dclA02 79.12 Thermotoga maritimaPutative uncharacterized protein 2.40.10.170 86 10 81 3.32 4.06
2ck3D01 78.62 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 10 70 2.79 3.96
2d9rA00 78.48 Porphyromonas gingivalisPutative uncharacterized protein 2.40.30.100 82 13 80 3.38 4.19
1pkyC03 77.40 Purine metabolismPyruvate metabolismMetabolic pathwaysGlycolysis / GluconeogenesisMembrane 2.40.33.10 68 8 75 3.69 4.92
2pp6A02 76.28 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 2.40.10.210 63 6 55 2.62 4.71
3ctaA02 76.04 Riboflavin metabolismRiboflavin kinaseRiboflavin kinase, archaea type [EC:2.7.1.161]Thermoplasma acidophilum 2.40.30.30 103 13 58 2.70 4.63
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1i8dC02
HIMTTAEVAIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAV
VDTVERVL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1i8dC02
HIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVN
IEIDPQTQAVVDTVERVL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"