CATH Domain: 1i8dA01 XML data for domain: 1i8dA01

Molscript image for 1i8dA01
1i8dA01
PDB coordinates for domain 1i8dA01

PDB 1i8d, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.20 Gene3D
2.40.30.20.4
2.40.30.20.4.1
2.40.30.20.4.1.1
2.40.30.20.4.1.1.1
2.40.30.20.4.1.1.1.1

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Segment boundaries for domain 1i8dA01

Chopping figure for domain 1i8dA01
DomainStart PDB ResidueStop PDB Residue
1i8dA01 1 89
1i8dA02 102 206

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.30.20.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kzlA02 89.15 NucleusCytosolSchizosaccharomyces pombeMetabolic pathwaysRiboflavin metabolism 2.40.30.20 101 20 84 1.16 1.38
1fr3A00 80.19 Metal binding proteinSporomusa ovata 2.40.50.100 67 14 67 3.12 4.63
2ck3D01 80.01 ATP catabolic processParkinson's diseaseOxidative phosphorylationAlzheimer's diseaseMetabolic pathways 2.40.10.170 73 16 74 2.79 3.76
3dclA02 79.65 Thermotoga maritimaPutative uncharacterized protein 2.40.10.170 86 17 79 3.58 4.49
2d9rA00 79.64 Porphyromonas gingivalisPutative uncharacterized protein 2.40.30.100 82 14 85 3.29 3.85
2fvgA02 78.90 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 2.40.30.40 76 9 83 3.90 4.69
1y0yA02 78.00 Endoglucanase [EC:3.2.1.4]Starch and sucrose metabolismPyrococcus horikoshiiTetrahedral aminopeptidase 2.40.30.40 81 6 84 3.63 4.31
1wlfA01 77.28 Mus musculusPeroxisome biogenesis factor 1 2.40.40.20 84 9 84 4.02 4.77
2ey4C00 77.02 Pyrococcus furiosusSmall nucleolar rnp gar1-like proteinRNA-binding protein 2.40.10.230 73 8 75 3.44 4.57
3kl9A02 75.36 Glutamyl aminopeptidase [EC:3.4.11.7]Glutamyl aminopeptidaseStreptococcus pneumoniae R6 2.40.30.40 74 6 74 3.14 4.23
1vhoA02 75.36 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 2.40.30.40 76 6 66 3.31 4.99
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1i8dA01
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD
WVNVERAAK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1i8dA01
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGD
WVNVERAAK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:29

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"