CATH Domain: 1i88A02 XML data for domain: 1i88A02

Molscript image for 1i88A02
1i88A02
PDB coordinates for domain 1i88A02

PDB 1i88, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.47 Peroxisomal Thiolase; Chain A, domain 1
3.40.47.10 Gene3D
3.40.47.10.6
3.40.47.10.6.1
3.40.47.10.6.1.1
3.40.47.10.6.1.1.1
3.40.47.10.6.1.1.1.1

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Segment boundaries for domain 1i88A02

Chopping figure for domain 1i88A02
DomainStart PDB ResidueStop PDB Residue
1i88A01 2 235
1i88A02 236 388

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.40.47.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tedA02 87.90 Chalcone/stilbene synthase family proteinMycobacterium tuberculosis 3.40.47.10 149 25 94 1.69 1.80
1u0mA02 86.96 Putative polyketide synthaseStreptomyces coelicolor 3.40.47.10 146 30 94 1.86 1.96
1hnjA02 84.19 Fatty acid biosynthesisMetabolic pathways3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]3-oxoacyl-[acyl-carrier-protein] synthase 3Escherichia coli K-12 3.40.47.10 146 16 90 2.85 3.14
1u6eA02 81.62 3-oxoacyl-[acyl-carrier-protein] synthase 3Beta-ketoacyl ACP synthase [EC:2.3.1.-]Mycobacterium tuberculosis 3.40.47.10 148 16 90 3.11 3.45
1tqyA02 77.53 3-oxoacyl-ACP synthase I [EC:2.3.1.-]Biosynthesis of type II polyketide backboneStreptomyces coelicolorActinorhodin polyketide putative beta-ketoacyl synthase 1 3.40.47.10 160 10 77 3.51 4.53
2vbaC02 77.09 Fatty acid biosynthesisMetabolic pathways3-oxoacyl-[acyl-carrier-protein] synthase 13-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]Fatty acid biosynthetic process 3.40.47.10 147 10 75 3.70 4.92
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1i88A02
IFEMVWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQ
KLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1i88A02
IFEMVWTAQTIAPDSEGAIDVHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQVEQ
KLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGPGLTIETVVLRSVA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:11

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"