CATH Domain: 1i6kA01 XML data for domain: 1i6kA01

Molscript image for 1i6kA01
1i6kA01
PDB coordinates for domain 1i6kA01

PDB 1i6k, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.6
3.40.50.620.6.1
3.40.50.620.6.1.1
3.40.50.620.6.1.1.1
3.40.50.620.6.1.1.1.1

[top]
Segment boundaries for domain 1i6kA01

Chopping figure for domain 1i6kA01
DomainStart PDB ResidueStop PDB Residue
1i6kA01 2 182
1i6kA01 294 326
1i6kA02 183 293

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.620.6.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2cyaA01 81.36 Aeropyrum pernixTyrosyl-tRNA synthetase 3.40.50.620 205 18 80 4.00 4.95
1h3fB01 78.63 Aminoacyl-tRNA biosynthesisThermus thermophilus HB27Tyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1] 3.40.50.620 203 14 77 3.40 4.37
1qtqA05 75.04 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 8 56 2.38 4.20
1rqgA01 75.00 Aminoacyl-tRNA biosynthesisSelenoamino acid metabolismPyrococcus abyssiMethionyl-tRNA synthetaseMethionyl-tRNA synthetase [EC:6.1.1.10] 3.40.50.620 182 6 63 2.89 4.55
1j09A01 73.30 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 13 56 2.42 4.30
[1]
Displaying entries 1 to 5 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1i6kA01
KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS
EVPAHAQAAWLQCIVYIGELERTQFKEKSAGKEAVSAGLLTYPPLAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKR
YGELFTIPEARIPKVGAREELDRVLDEGAEKANRVASEVRKEQAGLGR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1i6kA01
XKTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQ
SEVPAHAQAAWXLQCIVYIGELERXTQFKEKSAGKEAVSAGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAER
FNKRYGELFTIPEARIPKVGAREELDRVLDEGAEKANRVASEXVRKXEQAXGLGRRR
BLAST against CATH

[top]
Domain History Events (6)

Domain assigned by auto on 28 Nov 2006 18:26

Assigning to "3.40.50.620" based on similarity with "1i6mA01"

Flow stage update by auto on 28 Nov 2006 18:22

No in_process hits for Domain "1i6kA01" ready to be processed

Flow stage update by auto on 28 Nov 2006 18:22

NW result present for Domain "1i6kA01"

Flow stage update by auto on 28 Nov 2006 18:21

All required files are present for Domain "1i6kA01"

Flow stage update by auto on 28 Nov 2006 18:21

Beginning processing for Domain "1i6kA01"

Insertion by cuff on 21 Nov 2006 14:03

nice batch of choppings