CATH Domain: 1i27A00 XML data for domain: 1i27A00

Molscript image for 1i27A00
1i27A00
PDB coordinates for domain 1i27A00

PDB 1i27, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.1
1.10.10.10.1.1
1.10.10.10.1.1.1
1.10.10.10.1.1.1.1
1.10.10.10.1.1.1.1.1

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Segment boundaries for domain 1i27A00

Chopping figure for domain 1i27A00
DomainStart PDB ResidueStop PDB Residue
1i27A00 445 517

Structural Neighbourhood (25 entries)

There are 25 matching structural neighberhood comparisons for CATH ID 1.10.10.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 25 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hstA00 84.26 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 6 87 3.08 3.51
1yg2A01 83.05 Vibrio cholerae pathogenic cycleVibrio choleraePadR family transcriptional regulator, regulatory protein AphAPutative uncharacterized protein 1.10.10.10 79 9 69 2.60 3.73
1u5tB02 82.94 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 8 84 4.13 4.86
3bz6A02 82.87 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0502 protein PSPTO_2686 1.10.10.10 76 12 80 3.84 4.78
1oyiA00 82.76 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 8 75 2.93 3.89
2hoeA01 82.68 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 8 69 2.00 2.86
2heoA00 82.63 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 22 72 2.50 3.44
1ucrB00 82.57 Desulfovibrio vulgaris str. HildenboroughProtein dsvD 1.10.10.10 74 13 77 3.47 4.50
1w1wE00 82.31 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 8 76 3.33 4.34
1s3jA02 82.31 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 12 73 3.43 4.64
2o0yC01 82.09 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 73 6 82 3.87 4.71
1b4aA01 82.06 Geobacillus stearothermophilusArginine repressor 1.10.10.10 59 13 76 3.13 4.08
1cf7B00 82.03 Protein domain specific bindingTranscription factor Dp-2Transcription cofactor activityHomo sapiens 1.10.10.10 82 8 74 2.75 3.70
1lvaA01 81.88 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 59 3 73 3.39 4.58
1o57A01 81.25 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 5 78 3.72 4.76
2hr3D02 81.14 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 21 75 3.75 4.98
3dfgA01 80.24 Xanthomonas campestris pv. campestrisRegulatory proteinRegulatory protein recX 1.10.10.10 48 16 65 2.56 3.89
1hw5A02 79.73 TranscriptionTranscription activator activityTranscription repressor activityCRP/FNR family transcriptional regulator, cyclic AMP receptor proteinCatabolite gene activator 1.10.10.10 68 8 67 2.48 3.69
2c6yB00 79.22 Regulation of transcription from RNA polymerase II promoterMagnesium ion bindingSequence-specific DNA bindingForkhead box protein KHomo sapiens 1.10.10.10 95 6 73 3.66 4.97
1s6lA01 78.46 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 13 67 2.26 3.37
1r7jA00 77.88 Sulfolobus solfataricusDNA-binding protein 1.10.10.10 90 5 60 2.99 4.98
2fmlB03 76.53 MutT/nudix family proteinEnterococcus faecalis 1.10.10.10 61 13 80 3.98 4.92
1vq8I00 76.37 50S ribosomal protein L11PLarge subunit ribosomal protein L11RibosomeHaloarcula marismortui 1.10.10.250 70 5 65 3.25 4.94
3c18A03 75.00 Exiguobacterium sibiricum 255-15Putative uncharacterized protein 1.10.10.10 54 7 58 2.61 4.43
1zk8A01 74.65 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 46 10 53 2.55 4.77
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Displaying entries 1 to 25 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1i27A00
GPLGSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1i27A00
GPLGSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"