CATH Domain: 1hrnA02 XML data for domain: 1hrnA02

Molscript image for 1hrnA02
1hrnA02
PDB coordinates for domain 1hrnA02

PDB 1hrn, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.14
2.40.70.10.14.1
2.40.70.10.14.1.1
2.40.70.10.14.1.1.1
2.40.70.10.14.1.1.1.1

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Segment boundaries for domain 1hrnA02

Chopping figure for domain 1hrnA02
DomainStart PDB ResidueStop PDB Residue
1hrnA01 1 170
1hrnA02 171 325

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.40.70.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1j71A02 85.87 Candida tropicalisCandidapepsin 2.40.70.10 161 17 90 2.37 2.63
1lyaB00 83.47 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 43 65 2.60 3.97
2zjlA02 82.52 Beta-secretase 1Integral to plasma membraneBeta-aspartyl-peptidase activityProtein bindingBeta-amyloid metabolic process 2.40.70.10 197 19 68 2.30 3.38
1t6eX02 79.20 Triticum aestivumXylanase inhibitor 2.40.70.10 187 17 81 3.20 3.94
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1hrnA02
DPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNE
GPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1hrnA02
DPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYVVKCNE
GPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA
BLAST against CATH

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Domain History Events (2)

Domain assigned by lewis on 18 Jan 2007 19:27

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 19:27

Rechopping chains just before release v3.1.0 in order to fix missing fragments.