CATH Domain: 1hm9A01 XML data for domain: 1hm9A01

Molscript image for 1hm9A01
1hm9A01
PDB coordinates for domain 1hm9A01

PDB 1hm9, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.550 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A Gene3D
3.90.550.10.6
3.90.550.10.6.1
3.90.550.10.6.1.1
3.90.550.10.6.1.1.1
3.90.550.10.6.1.1.1.1

[top]
Segment boundaries for domain 1hm9A01

Chopping figure for domain 1hm9A01
DomainStart PDB ResidueStop PDB Residue
1hm9A01 2 251
1hm9A02 252 440

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.90.550.10.6.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jykA00 82.39 LicC proteinStreptococcus pneumoniae 3.90.550.10 227 17 86 3.25 3.74
1i52A00 82.21 Terpenoid backbone biosynthesisMetabolic pathways2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 3.90.550.10 225 18 83 3.30 3.94
1eziA00 81.89 Amino sugar and nucleotide sugar metabolismMetabolic pathwaysN-acylneuraminate cytidylyltransferaseN-acylneuraminate cytidylyltransferase [EC:2.7.7.43]Neisseria meningitidis 3.90.550.10 211 15 72 2.60 3.59
1e5kA00 77.33 Molybdopterin-guanine dinucleotide biosynthesis protein AEscherichia coli K-12Molybdopterin-guanine dinucleotide biosynthesis protein A 3.90.550.10 188 15 73 3.21 4.36
[1]
Displaying entries 1 to 4 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1hm9A01
SNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVTQSEQLGTGHA
VMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIVEQKDATDF
EKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVALATAESVMRR
RINHKHMVNG
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1hm9A01
MRGSHHHHHHSNFAIILAAGKGTRMKSDLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVLAGQTEFVT
QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLR
IVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLGVNDRVA
LATAESVMRRRINHKHMVNG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:35

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:35

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:46

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"