CATH Domain: 1hloA00 XML data for domain: 1hloA00

Molscript image for 1hloA00
1hloA00
PDB coordinates for domain 1hloA00

PDB 1hlo, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
4 Few Secondary Structures
4.10 Irregular
4.10.280 MYOD Basic-Helix-Loop-Helix Domain, subunit B
4.10.280.10 MYOD Basic-Helix-Loop-Helix Domain, subunit B Gene3D
4.10.280.10.1
4.10.280.10.1.1
4.10.280.10.1.1.2
4.10.280.10.1.1.2.1
4.10.280.10.1.1.2.1.2

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Segment boundaries for domain 1hloA00

Chopping figure for domain 1hloA00
DomainStart PDB ResidueStop PDB Residue
1hloA00 3 82

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 4.10.280.10.1.1.2.1.2 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nlwD00 92.56 MAX dimerization proteinNucleusCell proliferationSequence-specific DNA binding transcription factor activityTranscription corepressor activity 4.10.280.10 77 27 96 0.86 0.89
1am9B00 89.21 Positive regulation of transcription from RNA polymerase II promoterEndoplasmic reticulum membraneNucleusRNA polymerase II transcription factor activityProtein binding 4.10.280.10 75 25 92 1.55 1.68
1mdyA00 87.33 Positive regulation of transcription from RNA polymerase II promoterTranscription factor bindingSkeletal muscle tissue developmentPositive regulation of skeletal muscle tissue regenerationMyoblast cell fate determination 4.10.280.10 68 17 74 1.37 1.84
2ql2C00 87.10 Positive regulation of transcription from RNA polymerase II promoterResponse to lipopolysaccharideImmunoglobulin V(D)J recombinationHistone H3 acetylationTranscription factor complex 4.10.280.10 58 20 75 2.45 3.24
1uklC00 85.26 Sterol regulatory element-binding transcription factor 2Positive regulation of transcription from RNA polymerase II promoterSREBP-SCAP-Insig complexProtein C-terminus bindingNucleus 4.10.280.10 58 32 77 1.98 2.57
1gdtB02 71.77 Transposon gamma-delta resolvaseEscherichia coli K-12 1.20.5.40 40 5 35 1.64 4.67
1kilE00 70.80 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 36 1.60 4.39
1junA00 68.07 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 2 33 1.64 4.85
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1hloA00
NDDIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1hloA00
NDDIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:38

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:38

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:01

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"