CATH Domain: 1hdfA00 XML data for domain: 1hdfA00

Molscript image for 1hdfA00
1hdfA00
PDB coordinates for domain 1hdfA00

PDB 1hdf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.20 Gamma-B Crystallin; domain 1
2.60.20.10 Crystallins Gene3D
2.60.20.10.9
2.60.20.10.9.1
2.60.20.10.9.1.1
2.60.20.10.9.1.1.1
2.60.20.10.9.1.1.1.1

[top]
Segment boundaries for domain 1hdfA00

Chopping figure for domain 1hdfA00
DomainStart PDB ResidueStop PDB Residue
1hdfA00 1 100

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.20.10.9.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1g6eA00 79.31 Streptomyces tendaeAntifungal protein 2.60.20.30 87 9 80 3.86 4.78
1wktA00 77.95 Killer toxin HM-1Williopsis saturnus var. mrakii 2.60.20.20 87 11 76 3.38 4.40
1c01A00 75.56 Macadamia integrifoliaAntimicrobial peptide 1 2.60.20.30 76 3 72 3.16 4.34
[1]
Displaying entries 1 to 3 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1hdfA00
SVCKGVSGNPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKVGPNTKAFIFKDDRFNGNFIRLEESSQVT
DLTTRNLNDAISSIVATFE
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1hdfA00
SVCKGVSGNPAKGEVFLYKHVNFQGDSWKVTGNVYDFRSVSGLNDVVSSVKVGPNTKAFIFKDDRFNGNFIRLEESSQVT
DLTTRNLNDAISSXIVATFESA
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"