CATH Domain: 1hcqA00 XML data for domain: 1hcqA00

Molscript image for 1hcqA00
1hcqA00
PDB coordinates for domain 1hcqA00

PDB 1hcq, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.50 Erythroid Transcription Factor GATA-1; Chain A
3.30.50.10 Erythroid Transcription Factor GATA-1, subunit A Gene3D
3.30.50.10.4
3.30.50.10.4.1
3.30.50.10.4.1.1
3.30.50.10.4.1.1.1
3.30.50.10.4.1.1.1.3

[top]
Segment boundaries for domain 1hcqA00

Chopping figure for domain 1hcqA00
DomainStart PDB ResidueStop PDB Residue
1hcqA00 1 74

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.30.50.10.4.1.1.1.3 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kb2B00 90.25 Vitamin D3 receptorVitamin D receptor signaling pathwayNuclear receptor, subfamily 1, group I, member 1Retinoid X receptor bindingPositive regulation of vitamin D 24-hydroxylase activity 3.30.50.10 85 47 82 0.99 1.20
2a66A00 88.53 Promoter bindingPositive regulation of gene-specific transcriptionNucleusProtein bindingNuclear receptor, subfamily 5, group A, member 2 3.30.50.10 95 49 73 1.07 1.45
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1hcqA00
MKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1hcqA00
MKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKD
RRGG
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"