CATH Domain: 1h9mA02 XML data for domain: 1h9mA02

Molscript image for 1h9mA02
1h9mA02
PDB coordinates for domain 1h9mA02

PDB 1h9m, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.2
2.40.50.100.2.1
2.40.50.100.2.1.1
2.40.50.100.2.1.1.1
2.40.50.100.2.1.1.1.1

[top]
Segment boundaries for domain 1h9mA02

Chopping figure for domain 1h9mA02
DomainStart PDB ResidueStop PDB Residue
1h9mA01 62 131
1h9mA02 1 61
1h9mA02 132 141

Structural Neighbourhood (50 entries)

There are 50 matching structural neighberhood comparisons for CATH ID 2.40.50.100.2.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 50 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3d31A03 89.37 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.100 71 22 84 1.81 2.14
1b9mA03 88.73 Transcriptional regulator modEMolybdate transport system regulatory proteinEscherichia coli K-12 2.40.50.100 70 25 80 1.66 2.07
1b9mB02 88.56 Transcriptional regulator modEMolybdate transport system regulatory proteinEscherichia coli K-12 2.40.50.100 72 32 77 1.19 1.53
2awnB02 87.44 ABC transportersMaltooligosaccharide-importing ATPase activityMaltose/maltodextrin import ATP-binding protein MalKMaltose transportMaltose/maltodextrin transport system ATP-binding protein [EC:3.6.3.19] 2.40.50.100 66 12 80 1.80 2.24
3d31A02 85.71 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 26 64 1.23 1.90
3i4oA00 84.75 Translation initiation factor IF-1Translation initiation factor IF-1Mycobacterium tuberculosis 2.40.50.140 68 17 90 3.77 4.18
1bkbA02 84.32 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 11 84 2.75 3.25
3tssA02 84.10 Toxic shock syndrome toxin-1Staphylococcus aureus 2.40.50.110 71 11 78 2.41 3.06
1dgsA04 84.09 DNA ligaseThermus filiformis 2.40.50.140 73 7 86 3.40 3.94
1g29102 84.05 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 22 63 1.12 1.77
1ty0A02 83.75 Streptococcus pyogenesExotoxin J 2.40.50.110 75 5 82 2.87 3.47
1cukA01 83.41 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 13 84 3.09 3.66
1eu3A02 83.04 Mitogenic exotoxin Z 2Streptococcus pyogenes 2.40.50.110 80 2 76 2.72 3.57
1uebA02 82.91 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 6 84 3.19 3.77
1hczA02 82.61 Brassica rapa subsp. rapaApocytochrome f 2.40.50.100 59 10 80 3.93 4.90
1c9oA00 82.60 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 15 87 3.49 4.00
3d0fA01 82.42 MrcA; penicillin-binding 1 (Peptidoglycan synthetase) transmembrane proteinPenicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]Peptidoglycan biosynthesisNitrosomonas europaeaMetabolic pathways 2.40.50.140 67 10 81 3.23 3.95
2zteA01 82.42 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 13 83 3.20 3.85
1oxxK02 82.27 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 15 61 1.50 2.42
2ztdA01 82.15 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 12 87 4.32 4.95
1g29103 82.14 Maltose transport protein MalKThermococcus litoralis 2.40.50.100 65 10 80 3.06 3.81
2r7dA03 81.73 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 10 76 2.81 3.69
1x6oA02 81.41 Translation initiation factor eIF-5AEukaryotic initiation factor 5a, putativeLeishmania braziliensis 2.40.50.140 79 9 79 2.74 3.44
3cp0A00 81.01 Corynebacterium glutamicumMembrane protein implicated in regulation of membrane protease activity 2.40.50.140 62 14 85 4.24 4.94
1khiA02 80.99 Neurospora crassaWoronin body major protein 2.40.50.140 72 12 81 2.85 3.48
3irbA02 80.91 Sulfolobus solfataricusPutative uncharacterized protein 2.40.50.140 66 9 78 2.79 3.54
3hksA02 80.89 NucleusEukaryotic translation initiation factor 5A-2Host programmed cell death induced by symbiontTranslational initiationDefense response to bacterium 2.40.50.140 75 12 80 3.21 4.01
1uebA03 80.54 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 58 10 70 2.24 3.18
2p5zX04 80.32 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 13 71 2.83 3.94
1fviA02 80.32 Paramecium bursaria Chlorella virus 1A544R protein 2.40.50.140 82 9 81 3.55 4.34
1oxxK03 80.17 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.100 45 8 61 2.45 3.95
1y14D02 80.08 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 11 68 2.96 4.29
2qgqA02 80.07 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 8 73 3.49 4.77
2jqoA01 79.06 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 7 68 2.70 3.96
2z8lA02 78.63 Exotoxin 3Staphylococcus aureus 2.40.50.110 74 7 89 3.50 3.92
1wocC00 78.39 Homologous recombinationPrimosomal replication protein NEscherichia coli K-12Primosomal replication protein n 2.40.50.140 98 9 68 3.29 4.81
1a62A02 78.29 RNA degradationTranscriptional attenuationTranscription termination factor RhoProtein bindingEscherichia coli K-12 2.40.50.140 70 7 84 3.87 4.58
1go3E01 78.21 Pyrimidine metabolismPurine metabolismMethanocaldococcus jannaschiiDNA-directed RNA polymerase subunit E' [EC:2.7.7.6]RNA polymerase 2.40.50.140 94 16 64 3.02 4.65
1hh2P02 77.73 N utilization substance protein AThermotoga maritima 2.40.50.140 63 12 78 3.65 4.63
2hd3L00 77.69 Ethanolamine utilization protein EutNEthanolamine utilization protein eutNEscherichia coli O6 2.40.50.220 91 8 60 2.50 4.14
1enfA01 77.27 Staphylococcal enterotoxinEnterotoxin type HStaphylococcus aureus 2.40.50.110 78 8 78 3.66 4.68
1xxgA02 77.11 Staphylococcal enterotoxinEnterotoxin type GStaphylococcus aureus 2.40.50.110 83 8 72 3.51 4.86
1nnxA00 76.62 Escherichia coli O157:H7Protein ygiW 2.40.50.200 93 4 72 3.58 4.97
1fjgQ00 76.51 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 15 56 2.42 4.27
1ckmA02 76.41 Paramecium bursaria Chlorella virus 1MRNA-capping enzyme 2.40.50.140 83 5 63 3.09 4.84
3sebA01 76.16 Enterotoxin type BStaphylococcal enterotoxinStaphylococcus aureus 2.40.50.110 90 5 66 3.23 4.84
3kdfB00 75.15 DNA-dependent DNA replicationReplication protein A 32 kDa subunitNucleotide excision repairDNA replicationReplication factor A2 2.40.50.140 113 5 53 2.51 4.65
1gvpA00 74.94 Enterobacteria phage f1DNA-Binding protein G5P 2.40.50.140 87 5 68 3.42 4.96
1gm5A03 74.93 Thermotoga maritimaHomologous recombinationATP-dependent DNA helicase RecG [EC:3.6.1.-]ATP-dependent DNA helicase 2.40.50.140 102 12 68 3.41 4.97
3cqzH00 74.32 Pyrimidine metabolismDNA-directed RNA polymerases I, II, and III subunit RPABC3Purine metabolismRNA polymeraseProtein binding 2.40.50.140 116 9 56 2.59 4.62
[1]
Displaying entries 1 to 50 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1h9mA02
MKISARNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESARSLQLAAGKEVVAVVKAKASNVILGVP
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1h9mA02
GSHMKISARNVFKGTVSALKEGAVNAEVDILLGGGDKLAAVVTLESARSLQLAAGKEVVAVVKAKASNVILGVPA
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"