CATH Domain: 1h6kA01 XML data for domain: 1h6kA01

Molscript image for 1h6kA01
1h6kA01
PDB coordinates for domain 1h6kA01

PDB 1h6k, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.180 Gene3D
1.25.40.180.1
1.25.40.180.1.1
1.25.40.180.1.1.1
1.25.40.180.1.1.1.1
1.25.40.180.1.1.1.1.1

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Segment boundaries for domain 1h6kA01

Chopping figure for domain 1h6kA01
DomainStart PDB ResidueStop PDB Residue
1h6kA01 27 244
1h6kA02 309 478
1h6kA03 489 790

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.25.40.180.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h2uA01 94.10 Positive regulation of mRNA 3'-end processingMRNA cappingRNA cap bindingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decay 1.25.40.180 262 100 83 0.35 0.42
1uw4B00 80.92 Identical protein bindingNucleusNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensMRNA export from nucleus 1.25.40.180 247 11 82 3.59 4.35
2i2oA00 77.61 Danio rerioMIF4G domain-containing protein B 1.25.40.180 205 9 79 3.95 4.98
1hu3A00 76.45 RNA cap bindingEukaryotic translation initiation factor 4F complexEukaryotic translation initiation factor 4 gamma 3Translation initiation factor eIF-4FProtein binding 1.25.40.180 196 12 80 4.01 4.97
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1h6kA01
TEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVE
AMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYE
KKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRW
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1h6kA01
KTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYN
FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPW
VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRW
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:22

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"