CATH Domain: 1h3fB01 XML data for domain: 1h3fB01

Molscript image for 1h3fB01
1h3fB01
PDB coordinates for domain 1h3fB01

PDB 1h3f, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.620 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1 Gene3D
3.40.50.620.9
3.40.50.620.9.1
3.40.50.620.9.1.1
3.40.50.620.9.1.1.1
3.40.50.620.9.1.1.1.1

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Segment boundaries for domain 1h3fB01

Chopping figure for domain 1h3fB01
DomainStart PDB ResidueStop PDB Residue
1h3fB01 8 223
1h3fB02 224 340
1h3fB03 353 431

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.50.620.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2cyaA01 86.54 Aeropyrum pernixTyrosyl-tRNA synthetase 3.40.50.620 205 21 94 2.49 2.64
1wq4A01 84.22 Aminoacyl-tRNA biosynthesisMembraneTyrosyl-tRNA synthetaseTyrosyl-tRNA synthetase [EC:6.1.1.1]Escherichia coli K-12 3.40.50.620 226 27 87 2.32 2.65
1y42X01 80.18 Aminoacyl-tRNA biosynthesisTyrosyl-tRNA synthetase [EC:6.1.1.1]Neurospora crassaTyrosyl-tRNA synthetase, mitochondrial 3.40.50.620 267 23 75 2.66 3.52
2ip1A01 79.91 Tryptophan-tRNA ligase activityProtein bindingTryptophanyl-tRNA synthetase, cytoplasmicAminoacyl-tRNA biosynthesisCytoplasm 3.40.50.620 242 13 80 3.70 4.62
1qtqA05 76.13 Aminoacyl-tRNA biosynthesisMetabolic pathwaysGlutaminyl-tRNA synthetaseGlutamine-tRNA ligase activityGlutaminyl-tRNA aminoacylation 3.40.50.620 123 13 58 2.27 3.91
1rqgA01 75.70 Aminoacyl-tRNA biosynthesisSelenoamino acid metabolismPyrococcus abyssiMethionyl-tRNA synthetaseMethionyl-tRNA synthetase [EC:6.1.1.10] 3.40.50.620 182 6 63 2.84 4.50
1j09A01 75.41 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 3.40.50.620 121 15 58 2.64 4.54
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1h3fB01
PEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMITLEE
TRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQA
YDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1h3fB01
PEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPS
GRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIP
ISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPL
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:10

Assigning to "3.40.50.620" based on similarity with "1h3fA01" (NWSI: 100, NWO: 100, SPS: 97.63, SPO: 96, RMSD: 0.38)

Flow stage update by auto on 28 Apr 2006 17:49

NW result present for Domain "1h3fB01"

Flow stage update by auto on 28 Apr 2006 17:43

All required files are present for Domain "1h3fB01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1h3fB01"

Insertion by auto on 05 Mar 2006 16:43

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"