CATH Domain: 1h2vZ00 XML data for domain: 1h2vZ00

Molscript image for 1h2vZ00
1h2vZ00
PDB coordinates for domain 1h2vZ00

PDB 1h2v, Chain Z, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.12
3.30.70.330.12.1
3.30.70.330.12.1.1
3.30.70.330.12.1.1.1
3.30.70.330.12.1.1.1.1

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Segment boundaries for domain 1h2vZ00

Chopping figure for domain 1h2vZ00
DomainStart PDB ResidueStop PDB Residue
1h2vZ00 33 125

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 3.30.70.330.12.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3feyB00 95.64 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 95 90 0.36 0.40
1cvjA01 90.71 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 32 83 0.96 1.15
1fxlA02 90.19 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 25 81 1.00 1.23
2do0A01 89.64 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 26 82 1.09 1.32
1cvjG02 89.56 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 21 91 3.17 3.47
1oiaA00 89.40 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 22 93 3.06 3.27
1x5uA01 88.97 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 28 86 1.56 1.79
1x5oA01 88.73 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 16 84 1.39 1.64
2dgsA01 88.48 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 17 93 3.86 4.13
1fxlA01 88.47 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 33 77 1.39 1.80
2pehA01 87.58 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 15 84 3.66 4.32
1d8zA00 87.07 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 24 96 4.77 4.93
1hl6C00 86.76 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 25 72 2.35 3.26
2errA01 86.05 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 22 90 3.22 3.57
2jwnA01 85.97 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 22 83 3.78 4.55
1sjqA00 85.58 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 15 91 3.10 3.40
1jmtA00 85.32 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 15 79 2.24 2.81
1no8A00 85.20 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 32 84 2.42 2.85
1ufwA00 85.05 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 81 3.88 4.79
1sjrA00 84.60 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 17 79 3.56 4.47
1fjeB01 82.61 NucleolinMesocricetus auratus 3.30.70.330 81 22 82 3.39 4.10
3sxlA02 82.31 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 32 59 2.16 3.61
2u1aA00 82.19 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 15 88 3.32 3.77
1sxlA00 81.53 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 23 91 4.06 4.42
1qm9A01 79.21 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 19 84 4.16 4.91
1in0A01 78.57 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 11 76 3.01 3.96
2fb0A00 77.08 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 4 85 4.23 4.93
2od4B01 76.29 3.30.70.900 81 8 76 3.70 4.86
1eayD00 76.04 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 4 75 3.46 4.61
1owxA00 75.87 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 113 19 74 3.70 4.98
1fo1A01 72.70 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 3 56 2.82 4.99
1ft8A01 71.76 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 10 55 2.75 4.96
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Displaying entries 1 to 32 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1h2vZ00
EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR
TDWDAGFKEGRQY
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1h2vZ00
EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR
TDWDAGFKEGRQY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"