CATH Domain: 1gvpA00 XML data for domain: 1gvpA00

Molscript image for 1gvpA00
1gvpA00
PDB coordinates for domain 1gvpA00

PDB 1gvp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.11
2.40.50.140.11.1
2.40.50.140.11.1.1
2.40.50.140.11.1.1.1
2.40.50.140.11.1.1.1.1

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Segment boundaries for domain 1gvpA00

Chopping figure for domain 1gvpA00
DomainStart PDB ResidueStop PDB Residue
1gvpA00 1 87

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.40.50.140.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pfsA00 81.05 DNA-Binding protein G5PPseudomonas phage Pf3 2.40.50.140 78 10 86 2.97 3.45
2p5zX04 73.14 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 7 71 3.55 4.98
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gvpA00
MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDR
LRLVPAK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gvpA00
MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDR
LRLVPAK
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1gvp000" to "1gvpA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"