CATH Domain: 1gvkB01 XML data for domain: 1gvkB01

Molscript image for 1gvkB01
1gvkB01
PDB coordinates for domain 1gvkB01

PDB 1gvk, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.15
2.40.10.10.15.1
2.40.10.10.15.1.1
2.40.10.10.15.1.1.1
2.40.10.10.15.1.1.1.1

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Segment boundaries for domain 1gvkB01

Chopping figure for domain 1gvkB01
DomainStart PDB ResidueStop PDB Residue
1gvkB01 16 27
1gvkB01 121 232
1gvkB02 28 120
1gvkB02 233 245

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 2.40.10.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eaxA01 92.23 Suppressor of tumorigenicity protein 14 [EC:3.4.21.109]Integral to plasma membraneSuppressor of tumorigenicity 14 proteinHomo sapiensProteolysis 2.40.10.10 126 34 96 1.18 1.22
2o8tA01 92.07 Regulation of smooth muscle cell migrationCell surfaceUrokinase-type plasminogen activatorSignal transductionProteolysis 2.40.10.10 128 31 98 1.24 1.26
1k2i101 90.66 Bos taurusChymotrypsinogen A 2.40.10.10 118 44 91 1.17 1.28
1bioA01 90.31 Serine-type endopeptidase activityHomo sapiensComponent factor D [EC:3.4.21.46]Complement and coagulation cascadesComplement factor D 2.40.10.10 122 31 95 1.64 1.72
3gylB01 90.26 ProstasinPlasma membraneProtease, serine, 8 (prostasin) [EC:3.4.21.-]Homo sapiensExtracellular space 2.40.10.10 133 35 93 1.89 2.03
1eq9A01 89.81 Chymotrypsin-1Solenopsis invicta 2.40.10.10 117 35 91 1.54 1.68
2asuB01 89.44 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 122 31 93 2.01 2.14
2bvrH01 89.11 FibrinolysisSerine-type endopeptidase activityProthrombinSoluble fractionPositive regulation of protein phosphorylation 2.40.10.10 132 27 93 1.93 2.07
1q3xA02 89.03 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 32 90 1.85 2.04
2hlcA02 88.93 CollagenaseHypoderma lineatum 2.40.10.10 126 29 92 1.90 2.04
1elvA02 88.66 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 126 26 92 2.41 2.59
1si5H01 88.16 Pathways in cancerHepatocyte growth factorEpithelial to mesenchymal transitionRenal cell carcinomaCytokine-cytokine receptor interaction 2.40.10.10 119 31 91 2.51 2.75
1gvzA01 85.51 Equus caballusKallikrein-1E2 2.40.10.10 121 31 92 2.69 2.89
1yphE00 83.91 Bos taurusChymotrypsinogen A 2.40.10.10 97 37 65 1.46 2.22
1nn6A01 82.41 ChymaseChymase [EC:3.4.21.39]Homo sapiensRenin-angiotensin systemInterleukin-1 beta biosynthetic process 2.40.10.10 114 32 89 3.18 3.57
1y8tB02 80.95 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 111 13 72 3.10 4.27
2o8lA01 80.89 Glutamyl endopeptidase [EC:3.4.21.19]Glutamyl endopeptidaseStaphylococcus aureus subsp. aureus Mu50 2.40.10.10 115 10 71 2.35 3.27
1arbA01 80.23 Achromobacter lyticusProtease 1 2.40.10.10 122 9 85 3.68 4.28
1dleB02 79.81 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 142 15 72 2.82 3.89
2qf3B02 79.78 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 103 8 71 2.99 4.21
1p3cA01 79.46 Glutamyl-endopeptidaseBacillus intermedius 2.40.10.10 102 7 76 3.49 4.56
1lcyA02 78.95 Serine-type endopeptidase activityHtrA serine peptidase 2 [EC:3.4.21.108]Endoplasmic reticulum membraneParkinson's diseaseNucleus 2.40.10.10 84 15 64 2.70 4.21
1svpA02 70.81 Sindbis virusStructural polyprotein 2.40.10.10 86 9 54 2.45 4.48
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gvkB01
VVGGTEAQRNSWGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDG
VRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gvkB01
VVGGTEAQRNSWGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDG
VRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:26

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:41

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"