CATH Domain: 1gvfB00 XML data for domain: 1gvfB00

Molscript image for 1gvfB00
1gvfB00
PDB coordinates for domain 1gvfB00

PDB 1gvf, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.70 Aldolase class I Gene3D
3.20.20.70.6
3.20.20.70.6.1
3.20.20.70.6.1.1
3.20.20.70.6.1.1.1
3.20.20.70.6.1.1.1.1

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Segment boundaries for domain 1gvfB00

Chopping figure for domain 1gvfB00
DomainStart PDB ResidueStop PDB Residue
1gvfB00 2 284

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 3.20.20.70.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3elfA00 85.38 Pentose phosphate pathwayGlycolysis / GluconeogenesisFructose and mannose metabolismMetabolic pathwaysFructose-bisphosphate aldolase 3.20.20.70 329 25 81 1.78 2.19
1rd5A00 78.35 Indole-3-glycerol-phosphate lyase [EC:4.1.2.8]Indole-3-glycerol phosphate lyase, chloroplasticBenzoxazinoid biosynthesisZea maysMetabolic pathways 3.20.20.70 261 9 81 3.45 4.22
1w0mA00 77.12 Thermoproteus tenaxTriosephosphate isomerase 3.20.20.70 225 12 73 3.20 4.33
1q6oB00 76.69 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 10 72 2.92 4.04
1dvjA00 76.18 Pyrimidine metabolismMethanothermobacter thermautotrophicus str. Delta HOrotidine 5'-phosphate decarboxylaseOrotidine-5'-phosphate decarboxylase [EC:4.1.1.23]Metabolic pathways 3.20.20.70 239 10 74 3.24 4.35
3f4wA00 76.09 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 13 71 3.04 4.27
1qopA00 75.84 Phenylalanine, tyrosine and tryptophan biosynthesisSalmonella enterica subsp. enterica serovar TyphimuriumTryptophan synthase alpha chain [EC:4.2.1.20]Glycine, serine and threonine metabolismTryptophan synthase alpha chain 3.20.20.70 265 7 82 3.34 4.03
1thfD00 75.82 Thermotoga maritimaCyclase HisF [EC:4.1.3.-]Imidazole glycerol phosphate synthase subunit hisFHistidine metabolismMetabolic pathways 3.20.20.70 253 7 75 3.67 4.88
1m5wA00 75.68 Vitamin B6 metabolismMetabolic pathwaysPyridoxine 5-phosphate synthase [EC:2.6.99.2]Pyridoxine 5'-phosphate synthasePyridoxine biosynthetic process 3.20.20.70 242 7 74 3.19 4.26
2fliC00 75.37 Pentose phosphate pathwayPentose and glucuronate interconversionsMetabolic pathwaysRibulose-phosphate 3-epimerase [EC:5.1.3.1]Streptococcus pyogenes serotype M1 3.20.20.70 219 10 72 3.21 4.46
2yw3E00 74.98 Arginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysThermus thermophilus HB8 3.20.20.70 198 15 69 3.29 4.76
1wa3D00 74.94 Thermotoga maritimaArginine and proline metabolism2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]Glyoxylate and dicarboxylate metabolism 3.20.20.70 203 14 70 3.17 4.47
1ub3A00 74.37 Thermus thermophilus HB8Deoxyribose-phosphate aldolasePentose phosphate pathwayDeoxyribose-phosphate aldolase [EC:4.1.2.4] 3.20.20.70 211 10 67 3.37 4.98
3ctlA00 74.15 [EC:5.1.3.-]D-allulose-6-phosphate 3-epimeraseAllulose 6-phosphate 3-epimerase activityProtein bindingEscherichia coli K-12 3.20.20.70 219 12 71 3.44 4.80
1nsjA00 73.74 Thermotoga maritimaN-(5'-phosphoribosyl)anthranilate isomerasePhenylalanine, tyrosine and tryptophan biosynthesisPhosphoribosylanthranilate isomerase [EC:5.3.1.24]Metabolic pathways 3.20.20.70 205 13 70 3.52 4.99
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gvfB00
SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL
DHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVESAFLTDPQEAKRFVELTGV
DSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAE
NPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gvfB00
MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH
LDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEA
KRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFA
GAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:19

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"