CATH Domain: 1gv9A00 XML data for domain: 1gv9A00

Molscript image for 1gv9A00
1gv9A00
PDB coordinates for domain 1gv9A00

PDB 1gv9, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.5
2.60.120.200.5.1
2.60.120.200.5.1.1
2.60.120.200.5.1.1.1
2.60.120.200.5.1.1.1.1

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Segment boundaries for domain 1gv9A00

Chopping figure for domain 1gv9A00
DomainStart PDB ResidueStop PDB Residue
1gv9A00 50 277

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.60.120.200.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1avbA00 82.96 Arcelin-1Phaseolus vulgaris 2.60.120.200 226 14 85 2.98 3.47
2gmeA00 82.90 Pterocarpus angolensisLectin 2.60.120.200 217 15 84 2.89 3.41
2eigA00 82.06 Lotus tetragonolobusLectin 2.60.120.200 230 15 83 2.76 3.31
1oq1A00 78.75 Bacillus subtilisUncharacterized protein yesU 2.60.120.200 215 10 82 3.27 3.94
2ltnA00 78.50 Pisum sativumLectin 2.60.120.200 181 11 68 2.75 4.01
1ux6A02 77.30 ECM-receptor interactionPositive regulation of tumor necrosis factor biosynthetic processPositive regulation of angiogenesisProteoglycan bindingNegative regulation of caspase activity 2.60.120.200 208 6 75 2.81 3.71
1s0iA02 76.27 Trypanosoma cruziTrans-sialidase 2.60.120.200 226 8 74 3.33 4.48
1bkzA00 74.86 Homo sapiensSugar bindingGalectin-7Galectin-7Extracellular space 2.60.120.200 135 6 58 2.43 4.14
1g86A00 73.90 Eosinophil lysophospholipaseHomo sapiensMulticellular organismal development 2.60.120.200 141 8 61 2.69 4.35
1kjlA00 73.86 Galectin-3NucleusPlasma membraneGalectin-3Mitochondrial inner membrane 2.60.120.200 138 12 59 2.75 4.61
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gv9A00
PHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGAD
GLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKIT
YYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gv9A00
PHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGAD
GLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPV
RAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPT
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:05

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"