CATH Domain: 1gv2A01 XML data for domain: 1gv2A01

Molscript image for 1gv2A01
1gv2A01
PDB coordinates for domain 1gv2A01

PDB 1gv2, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.1
1.10.10.60.1.1
1.10.10.60.1.1.1
1.10.10.60.1.1.1.1
1.10.10.60.1.1.1.1.1

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Segment boundaries for domain 1gv2A01

Chopping figure for domain 1gv2A01
DomainStart PDB ResidueStop PDB Residue
1gv2A01 89 144
1gv2A02 145 190

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 1.10.10.60.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gv2A02 92.58 Transcription factor activityRegulation of transcription, DNA-dependentEmbryonic gut developmentNucleusProtein binding 1.10.10.60 46 32 83 0.85 1.02
1w0uA00 91.11 NucleusNucleic acid bindingOrganization of chromosome structureProtein C-terminus bindingSingle-stranded telomeric DNA binding 1.10.10.60 55 30 94 3.29 3.48
1w0tA00 90.66 Organization of chromosome structureRegulation by binding / dissociationDNA synthesis and replicationProtein bindingNuclear and chromosomal cycle 1.10.10.60 52 28 89 2.48 2.78
1iv6A00 87.74 1.10.10.60 57 27 94 3.62 3.82
1o4xA02 85.51 1.10.10.60 53 15 89 2.64 2.96
1fjlB00 85.24 Segmentation protein pairedDrosophila melanogasterPeriodic partitioning by pair rule gene 1.10.10.60 57 3 91 4.35 4.77
1e3oC02 85.07 POU domain transcription factor, class 2Negative regulation of transcriptionNucleusTranscription factor activityPOU domain, class 2, transcription factor 1 1.10.10.60 48 14 80 2.81 3.51
1fexA00 84.65 NucleusHomo sapiensSingle-stranded telomeric DNA bindingTelomere maintenance via telomeraseTelomeric repeat-binding factor 2-interacting protein 1 1.10.10.60 59 16 83 2.63 3.17
2hddB00 84.49 1.10.10.60 56 10 92 4.24 4.57
1jggA00 84.47 1.10.10.60 57 12 92 4.10 4.41
1k61C00 83.38 Mating-type protein ALPHA2Regulator of transcription factorPheromone response, mating-type determination, sex-specific proteinsGeneral transcription activitiesRegulation of transcription from RNA polymerase II promoter 1.10.10.60 56 14 87 2.82 3.22
1t33B01 82.11 Salmonella typhimuriumPutative transcriptional repressor 1.10.10.60 56 5 89 4.42 4.95
1mh3A03 81.99 NucleusRegulator of transcription factorMating-type protein A1Pheromone response, mating-type determination, sex-specific proteinsGeneral transcription activities 1.10.10.60 51 7 85 3.21 3.76
3cdlA01 81.72 1.10.10.60 53 5 85 3.91 4.58
1zkgA01 81.58 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 8 70 2.83 3.99
2dmqA01 81.36 LIM homeobox protein 2/9LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 7 85 3.22 3.75
2ibdA01 80.97 Possible transcriptional regulatorRhodococcus sp. RHA1 1.10.10.60 45 4 69 2.43 3.52
2id3A01 80.78 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 10 74 3.27 4.39
3ccyA01 80.51 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 6 69 2.65 3.84
1b8iB00 80.50 1.10.10.60 58 10 89 3.30 3.68
2hyjA01 80.36 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 6 70 2.64 3.72
3bqzA01 79.87 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 6 76 3.51 4.60
1au7A02 79.47 1.10.10.60 57 9 91 4.46 4.89
3c2bA01 78.93 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 9 80 3.60 4.50
1lfbA00 78.83 Protein bindingPositive regulation of transcription from RNA polymerase II promoterDNA bindingTranscription factor activityPositive regulation of transcription, DNA-dependent 1.10.10.60 77 7 67 2.96 4.38
1ic8A02 77.91 1.10.10.60 74 9 67 3.00 4.44
1g2hA00 76.21 Transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transportHaemophilus influenzaeTranscriptional regulatory protein tyrR 1.10.10.60 61 9 80 3.87 4.82
1iufA02 75.14 Centromeric DNA bindingHistone modificationNucleusCondensed nuclear chromosome, pericentric regionProtein binding 1.10.10.60 64 3 76 3.33 4.35
2jn6A01 74.49 Corynebacterium glutamicumPutative uncharacterized protein Cgl2762 1.10.1680.10 85 10 55 2.63 4.76
1gk9A02 74.43 Penicillin G acylase precursorEscherichia coli 1.10.287.150 30 16 50 2.37 4.66
2raeA01 73.79 Rhodococcus sp. RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 4 58 2.37 4.07
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Displaying entries 1 to 31 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gv2A01
ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gv2A01
ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK
BLAST against CATH

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Domain History Events (2)

Domain assigned by lewis on 18 Jan 2007 19:15

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 19:15

Rechopping chains just before release v3.1.0 in order to fix missing fragments.