CATH Domain: 1gu4A00 XML data for domain: 1gu4A00

Molscript image for 1gu4A00
1gu4A00
PDB coordinates for domain 1gu4A00

PDB 1gu4, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.9
1.20.5.170.9.1
1.20.5.170.9.1.1
1.20.5.170.9.1.1.1
1.20.5.170.9.1.1.1.1

[top]
Segment boundaries for domain 1gu4A00

Chopping figure for domain 1gu4A00
DomainStart PDB ResidueStop PDB Residue
1gu4A00 268 333

Structural Neighbourhood (48 entries)

There are 48 matching structural neighberhood comparisons for CATH ID 1.20.5.170.9.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 48 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1l2pA00 89.03 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 11 84 1.58 1.87
1pl5A00 88.70 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 7 86 2.01 2.32
1gmjD00 88.15 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 10 86 2.69 3.12
1nwqA00 88.01 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 76 92 2.51 2.72
1ci6A00 87.52 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 10 86 1.99 2.31
1ik7A00 86.69 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 0 80 1.60 2.00
1n2dC00 85.76 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 10 73 2.19 2.97
1ci6B00 85.07 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 95 69 1.48 2.14
1gk4C00 84.47 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 6 85 3.10 3.62
1hf9A00 83.35 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 63 1.03 1.63
1jocA01 83.17 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 16 61 1.03 1.67
1wt6B00 82.90 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 4 85 3.47 4.08
3effK02 82.83 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 8 69 1.45 2.09
2b9bA04 82.63 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 8 81 3.64 4.46
2basA02 82.50 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 6 70 2.41 3.41
1pfiA00 82.38 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 10 70 2.20 3.11
2p7jB01 82.33 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 10 60 1.22 2.03
1ybkA00 82.13 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 5 76 3.46 4.50
2ifoA00 81.25 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 8 70 2.51 3.55
3kpeA00 80.90 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 4 70 3.11 4.39
1piqA00 80.82 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 9 47 0.56 1.17
1jcdB00 80.50 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 1 56 2.50 4.39
1g2cB00 80.49 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 7 61 2.86 4.65
1j1dB00 80.42 Response to calcium ionTroponin C bindingPositive regulation of ATPase activityActin bindingNegative regulation of ATPase activity 1.20.5.350 70 6 67 3.30 4.91
1kilE00 80.27 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 63 2.79 4.42
1ifpA00 80.23 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 6 67 3.23 4.77
1tiiC00 80.09 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 11 55 2.61 4.71
1svfC00 79.80 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 0 60 2.56 4.27
1pp9E01 79.68 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 4 60 2.59 4.32
1junA00 79.63 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 20 63 1.80 2.85
1u57A00 78.94 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 69 3.14 4.54
1r8eA03 78.68 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 6 55 2.48 4.48
1dh3A00 78.03 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 9 61 2.71 4.40
2qjyC01 77.29 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 6 50 1.80 3.55
1a2xB00 77.03 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 25 47 1.28 2.68
2hr3A01 76.44 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 6 46 1.72 3.73
1vf5C03 75.67 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 46 1.44 3.12
1bmfG00 75.14 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 6 52 1.97 3.76
1fdoA05 73.56 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 3 41 1.45 3.49
2oarE02 71.21 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 13 33 1.43 4.22
1mqsB00 70.87 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 15 40 1.74 4.35
1be3K00 70.47 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 18 33 1.05 3.10
2p10B02 70.20 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 19 36 1.70 4.60
2oarA02 66.51 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 5 26 0.43 1.64
3c8vA04 65.38 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 29 1.17 4.00
2qiwA02 62.95 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 27 1.07 3.86
1d66B02 61.61 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 20 23 0.34 1.47
1mkmA02 58.84 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 21 0.62 2.88
[1]
Displaying entries 1 to 48 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1gu4A00
DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1gu4A00
VKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"