CATH Domain: 1gskA03 XML data for domain: 1gskA03

Molscript image for 1gskA03
1gskA03
PDB coordinates for domain 1gskA03

PDB 1gsk, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.420 Cupredoxins - blue copper proteins Gene3D
2.60.40.420.14
2.60.40.420.14.1
2.60.40.420.14.1.1
2.60.40.420.14.1.1.1
2.60.40.420.14.1.1.1.1

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Segment boundaries for domain 1gskA03

Chopping figure for domain 1gskA03
DomainStart PDB ResidueStop PDB Residue
1gskA01 2 175
1gskA02 176 356
1gskA03 357 510

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.60.40.420.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1sddB02 83.10 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 125 9 75 2.43 3.20
2j5wA02 82.29 Ferroxidase activityChaperone bindingExtracellular spaceCeruloplasmin [EC:1.16.3.1]Porphyrin and chlorophyll metabolism 2.60.40.420 150 8 75 2.36 3.13
1kbvA02 82.09 Neisseria gonorrhoeaeCopper-containing nitrite reductase 2.60.40.420 154 8 79 2.26 2.83
1kbvA01 80.78 Neisseria gonorrhoeaeCopper-containing nitrite reductase 2.60.40.420 144 8 70 2.35 3.32
1v10A03 79.68 LaccaseRigidoporus microporus 2.60.40.420 181 12 70 3.05 4.31
1ibyA00 79.68 Chain A, Red Copper Protein NitrosocyaninNitrosomonas europaea 2.60.40.420 112 10 64 2.05 3.19
1aozA03 79.24 L-ascorbate oxidaseCucurbita pepo var. melopepo 2.60.40.420 216 14 63 2.88 4.54
1aozA01 78.96 L-ascorbate oxidaseCucurbita pepo var. melopepo 2.60.40.420 130 13 73 2.94 4.01
1sddB01 78.86 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 156 4 69 3.03 4.34
2qt6A02 78.04 LaccaseLentinus tigrinus 2.60.40.420 176 9 72 3.28 4.51
2gsmB02 77.81 Rhodobacter sphaeroidesOxidative phosphorylationCytochrome c oxidase subunit 2Cytochrome c oxidase subunit II [EC:1.9.3.1]Metabolic pathways 2.60.40.420 153 5 63 2.56 4.02
1v54B02 77.13 Cardiac muscle contractionParkinson's diseaseOxidative phosphorylationCytochrome c oxidase subunit 2Alzheimer's disease 2.60.40.420 136 5 63 2.56 4.02
2q9oA02 77.10 Laccase activityMelanocarpus albomycesLaccase-1Copper ion bindingCellulose catabolic process 2.60.40.420 184 9 69 3.39 4.91
1cyxA00 76.82 Oxidative phosphorylationMetabolic pathwaysIntegral to plasma membraneOxidoreduction-driven active transmembrane transporter activityEscherichia coli K-12 2.60.40.420 158 7 58 2.47 4.24
1aozA02 75.30 L-ascorbate oxidaseCucurbita pepo var. melopepo 2.60.40.420 206 10 61 2.94 4.81
1sddA02 74.90 Coagulation factor VBos taurusCoagulation factor V (labile factor)Complement and coagulation cascades 2.60.40.420 101 13 60 2.54 4.21
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gskA03
SYPSVQHERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPF
DIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gskA03
SYPSVQHERIQNIRTLKLAGTQDEYGRPVLLLNNKRWHDPVTETPKVGTTEIWSIINPTRGTHPIHLHLVSFRVLDRRPF
DIARYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILEHEDYDMMRPMDITDPHK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"