CATH Domain: 1gsaA01 XML data for domain: 1gsaA01

Molscript image for 1gsaA01
1gsaA01
PDB coordinates for domain 1gsaA01

PDB 1gsa, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.20 Gene3D
3.40.50.20.13
3.40.50.20.13.1
3.40.50.20.13.1.1
3.40.50.20.13.1.1.1
3.40.50.20.13.1.1.1.1

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Segment boundaries for domain 1gsaA01

Chopping figure for domain 1gsaA01
DomainStart PDB ResidueStop PDB Residue
1gsaA01 1 114
1gsaA01 301 314
1gsaA02 115 136
1gsaA02 202 300
1gsaA03 137 201

Structural Neighbourhood (32 entries)

There are 32 matching structural neighberhood comparisons for CATH ID 3.40.50.20.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 32 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qzjA00 78.46 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 9 70 2.99 4.25
1zgzA00 78.32 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 13 68 3.20 4.65
1srrC00 78.29 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 12 68 3.05 4.44
1dbqA01 78.25 LacI family transcriptional regulator, purine nucleotide synthesis repressorHTH-type transcriptional repressor purREscherichia coli K-12 3.40.50.2300 134 9 67 3.02 4.45
2b4aA00 78.18 BH3024 proteinBacillus halodurans 3.40.50.2300 116 9 71 3.11 4.33
2jbaA00 78.14 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 12 71 3.36 4.67
1qo0D01 77.89 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 8 67 2.40 3.53
3gl9B00 77.80 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulatorProtein binding 3.40.50.2300 118 11 70 3.45 4.91
2qv0A00 77.69 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 9 68 3.02 4.39
3cnbA00 77.50 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 8 68 2.99 4.35
1ys7A01 77.46 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 10 71 3.36 4.73
3cs3A01 77.11 Sugar-binding transcriptional regulator, LacI familyLacI family transcriptional regulatorEnterococcus faecalis 3.40.50.2300 122 10 69 3.28 4.72
2qvgA00 77.06 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 7 74 3.47 4.68
2zayA00 76.91 Response regulator receiver proteinDesulfuromonas acetoxidans DSM 684 3.40.50.2300 123 6 71 3.42 4.76
1dcfA00 76.67 Response to insectResponse to abscisic acid stimulusResponse to heatResponse to gibberellin stimulusDefense response to bacterium 3.40.50.2300 133 10 68 2.74 4.00
1mb3A00 76.57 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 13 70 3.34 4.75
1jbeA00 76.24 Bacterial chemotaxisTwo-component systemEscherichia coli O157:H7Two-component system, chemotaxis family, response regulator CheYChemotaxis protein cheY 3.40.50.2300 125 8 70 3.30 4.69
2rdmA00 76.15 Response regulator receiver proteinSinorhizobium medicae WSM419 3.40.50.2300 117 8 66 3.04 4.58
2qsjB00 76.06 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 11 64 3.20 5.00
1a04A01 75.77 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 8 68 2.83 4.12
2qxyA00 75.76 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 6 67 2.73 4.02
3cu5B00 75.54 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 3 67 3.20 4.74
2ayzA00 75.48 Two-component systemTwo-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]Sensor kinase protein rcsCEscherichia coli K-12 3.40.50.2300 133 7 69 3.11 4.50
3d8uB01 75.26 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 6 67 3.29 4.90
2rjnA00 75.15 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomainNeptuniibacter caesariensis 3.40.50.2300 135 8 67 3.13 4.64
2eklA01 75.13 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]Sulfolobus tokodaiiGlycine, serine and threonine metabolismMetabolic pathways313aa long hypothetical D-3-phosphoglycerate dehydrogenase 3.40.50.720 121 11 65 3.28 5.00
1dbwB00 75.08 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 8 71 3.27 4.60
2qr3A00 74.99 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 11 70 3.19 4.54
1s8nA01 74.80 Response regulator NasTProbable transcriptional regulatory protein pdtaRMycobacterium tuberculosis 3.40.50.2300 132 13 66 3.23 4.84
1w25B02 74.78 Two-component systemCell cycle - CaulobacterCaulobacter vibrioidesIdentical protein bindingTwo-component system, cell cycle response regulator 3.40.50.2300 143 7 62 3.11 4.94
3cz5B00 74.57 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 15 65 3.15 4.85
1a2oA01 74.31 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 9 66 3.11 4.65
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Displaying entries 1 to 32 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gsaA01
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADL
DVILMRKDPPFDTEFIYATYILERAEEKGTLIVNITGMLMDAIEARLQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gsaA01
MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADL
DVILMRKDPPFDTEFIYATYILERAEEKGTLIVNITGMLMDAIEARLQQQ
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1gsa001" to "1gsaA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"