CATH Domain: 1gqpB00 XML data for domain: 1gqpB00

Molscript image for 1gqpB00
1gqpB00
PDB coordinates for domain 1gqpB00

PDB 1gqp, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.260 Galactose-binding domain-like Gene3D
2.60.120.260.23
2.60.120.260.23.1
2.60.120.260.23.1.1
2.60.120.260.23.1.1.1
2.60.120.260.23.1.1.1.1

[top]
Segment boundaries for domain 1gqpB00

Chopping figure for domain 1gqpB00
DomainStart PDB ResidueStop PDB Residue
1gqpB00 63 256

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.60.120.260.23.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tvgA00 80.50 Heat shock protein beta-11Homo sapiens 2.60.120.260 136 14 66 2.17 3.26
1w8oA03 79.74 Micromonospora viridifaciensSialidase 2.60.120.260 145 11 71 2.30 3.23
1k12A00 78.97 FucolectinCalcium ion bindingFucose bindingRegulation of complement activation, lectin pathwayAnguilla anguilla 2.60.120.260 158 11 73 3.67 4.96
2qqiA01 77.30 Cell-cell signalingAxon guidanceOrgan morphogenesisPositive regulation of cell proliferationHomo sapiens 2.60.120.260 153 8 72 3.60 4.98
3k77A00 77.05 DNA repair protein XRCC1Homo sapiensProtein binding 2.60.120.260 152 11 71 3.26 4.57
1o59A02 76.81 Allantoicase [EC:3.5.3.4]Purine metabolismSaccharomyces cerevisiaeAllantoicaseAllantoin catabolic process 2.60.120.260 138 10 66 2.74 4.12
1o59A01 76.80 Allantoicase [EC:3.5.3.4]Purine metabolismSaccharomyces cerevisiaeAllantoicaseAllantoin catabolic process 2.60.120.260 174 10 75 3.32 4.40
2qqiA02 75.19 Cell-cell signalingAxon guidanceOrgan morphogenesisPositive regulation of cell proliferationHomo sapiens 2.60.120.260 154 9 71 3.46 4.85
[1]
Displaying entries 1 to 8 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1gqpB00
SVLVLDDRTKDLYVNGFQEIQYQNPTPENLQHMFHQGIEILDSARMINVTHLALWKPSSFKLGNPVDFALDDNYDTFWQS
DGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKC
QFIRLLFPVNHENGKDTHLRGIRLYVPS
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1gqpB00
SVLVLDDRIVDAATKDLYVNGFQEEIQYQNPTPENLQHMFHQGIEILDSARMINVTHLALWKPSSFKLGNPVDFALDDNY
DTFWQSDGGQPHQLDIMFSKRMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNRED
DQLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPS
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"