CATH Domain: 1gppA00 XML data for domain: 1gppA00

Molscript image for 1gppA00
1gppA00
PDB coordinates for domain 1gppA00

PDB 1gpp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.170 Beta Complex
2.170.16 Endonuclease - Pi-scei; Chain A, domain 1
2.170.16.10 Endonuclease - Pi-scei; Chain A, domain 1 Gene3D
2.170.16.10.1
2.170.16.10.1.1
2.170.16.10.1.1.1
2.170.16.10.1.1.1.1
2.170.16.10.1.1.1.1.1

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Segment boundaries for domain 1gppA00

Chopping figure for domain 1gppA00
DomainStart PDB ResidueStop PDB Residue
1gppA00 -2 453

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.170.16.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1am2A00 77.03 DNA gyrase subunit AMycobacterium xenopi 2.170.16.10 181 13 64 3.04 4.71
1mi8A00 76.46 DNA replicationReplicative DNA helicase [EC:3.6.1.-]Replicative DNA helicaseSynechocystis sp. PCC 6803 2.170.16.10 141 12 58 2.08 3.53
1at0A00 75.86 Germ cell attractionHedgehog signaling pathwayMorphogen activityPositive regulation of smoothened signaling pathwayGenital disc anterior/posterior pattern formation 2.170.16.10 142 11 60 2.69 4.46
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gppA00
SACFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSMPELLKFTCNATHELVVRTPRSVR
RLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSH
VRKATYQTYAPIGAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gppA00
MHHHHHHGSACFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGSETMYSVVQKSQHRAHKSDSSREMPEL
LKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPVSEGPERANELVESYRKAS
NKAYFEWTIEARDLSLLGSHVRKATYQTYAPIGAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"