CATH Domain: 1gpmA01 XML data for domain: 1gpmA01

Molscript image for 1gpmA01
1gpmA01
PDB coordinates for domain 1gpmA01

PDB 1gpm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.880 Gene3D
3.40.50.880.16
3.40.50.880.16.1
3.40.50.880.16.1.1
3.40.50.880.16.1.1.1
3.40.50.880.16.1.1.1.1

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Segment boundaries for domain 1gpmA01

Chopping figure for domain 1gpmA01
DomainStart PDB ResidueStop PDB Residue
1gpmA01 9 206
1gpmA02 207 400
1gpmA03 417 524

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.880.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1qdlB00 88.16 Anthranilate synthase component II [EC:4.1.3.27]Phenylalanine, tyrosine and tryptophan biosynthesisSulfolobus solfataricusAnthranilate synthase component IIProtein binding 3.40.50.880 195 24 93 1.94 2.08
1ka9H00 81.04 Thermus thermophilus HB8Imidazole glycerol phosphate synthase subunit hisHProtein binding 3.40.50.880 195 15 85 3.08 3.61
2vdjA01 78.48 Homoserine O-succinyltransferase [EC:2.3.1.46]Sulfur metabolismCysteine and methionine metabolismBacillus cereus ATCC 10987Homoserine O-succinyltransferase 3.40.50.880 251 18 75 2.81 3.73
1vcnA02 78.15 Pyrimidine metabolismThermus thermophilus HB8CTP synthaseCTP synthase [EC:6.3.4.2]Metabolic pathways 3.40.50.880 227 17 80 3.57 4.43
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gpmA01
RILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYG
MQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIM
ANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gpmA01
RILILDFGSQYTQLVARRVRELGVYCELWAWDVTEAQIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYG
MQTMAMQLGGHVEASNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIM
ANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:18

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"