CATH Domain: 1gpeA01 XML data for domain: 1gpeA01

Molscript image for 1gpeA01
1gpeA01
PDB coordinates for domain 1gpeA01

PDB 1gpe, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.11
3.50.50.60.11.1
3.50.50.60.11.1.1
3.50.50.60.11.1.1.1
3.50.50.60.11.1.1.1.1

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Segment boundaries for domain 1gpeA01

Chopping figure for domain 1gpeA01
DomainStart PDB ResidueStop PDB Residue
1gpeA01 8 57
1gpeA01 240 328
1gpeA01 439 455
1gpeA01 523 557
1gpeA01 575 587
1gpeA02 58 86
1gpeA02 97 113
1gpeA02 222 239
1gpeA03 114 221
1gpeA03 329 438
1gpeA03 456 522
1gpeA03 558 574

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.50.50.60.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3fbsB01 79.84 Agrobacterium tumefaciens str. C58Oxidoreductase 3.50.50.60 188 13 66 3.07 4.61
1ju2A01 79.72 Prunus dulcisR-oxynitrile lyase isoenzyme 1 3.50.50.60 332 30 59 2.13 3.61
1fl2A01 79.51 Alkyl hydroperoxide reductase subunit F [EC:1.6.4.-]Alkyl hydroperoxide reductase subunit FProtein bindingEscherichia coli K-12Cytosol 3.50.50.60 186 9 67 3.24 4.79
1fcdA01 78.18 Allochromatium vinosumSulfide dehydrogenase [flavocytochrome c] flavoprotein chain 3.50.50.60 188 13 64 2.79 4.31
1trbA01 77.82 Pyrimidine metabolismThioredoxin reductase (NADPH) [EC:1.8.1.9]Thioredoxin reductaseProtein bindingEscherichia coli K-12 3.50.50.60 187 11 64 2.79 4.34
2zbwA01 77.15 Pyrimidine metabolismThermus thermophilus HB8Thioredoxin reductase (NADPH) [EC:1.8.1.9]Ferredoxin--NADP reductase 3.50.50.60 208 10 63 2.82 4.41
3gyjA01 73.89 Streptomyces sp. SA-COOCholesterol oxidase 3.50.50.60 332 15 48 2.40 4.95
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gpeA01
DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGNYQRSNLEILTGQMVGKVLFKQTASGPQAV
GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGISVHILSSDPYLWQFANDSSCS
MMSRELGGVVDATAKVYGTQGLRVIDGSIPPVADAILDDYAKSA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gpeA01
DVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGNYQRSNLEILTGQMVGKVLFKQTASGPQAV
GVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGISVHILSSDPYLWQFANDSSCS
MMSRELGGVVDATAKVYGTQGLRVIDGSIPPVADAILDDYAKSA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"