CATH Domain: 1go3E01 XML data for domain: 1go3E01

Molscript image for 1go3E01
1go3E01
PDB coordinates for domain 1go3E01

PDB 1go3, Chain E, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.140 Nucleic acid-binding proteins Gene3D
2.40.50.140.8
2.40.50.140.8.1
2.40.50.140.8.1.1
2.40.50.140.8.1.1.1
2.40.50.140.8.1.1.1.1

[top]
Segment boundaries for domain 1go3E01

Chopping figure for domain 1go3E01
DomainStart PDB ResidueStop PDB Residue
1go3E01 82 182
1go3E02 1 81

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 2.40.50.140.8.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1y14D02 89.52 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 18 86 1.49 1.73
2asbA01 82.39 N utilization substance protein ATranscription elongation protein nusAMycobacterium tuberculosis 2.40.50.140 75 18 64 1.90 2.93
1kl9A01 81.91 Translation initiation factor activityTranslation initiation factor eIF-2 alpha subunitEukaryotic translation initiation factor 2 subunit 1PolysomeHomo sapiens 2.40.50.140 72 18 59 1.60 2.69
2ahoB01 81.36 Translation initiation factor eIF-2 alpha subunitSulfolobus solfataricusTranslation initiation factor 2 subunit alpha 2.40.50.140 80 16 70 2.59 3.69
1hh2P02 81.16 N utilization substance protein AThermotoga maritima 2.40.50.140 63 19 64 1.74 2.68
1t9hA01 80.09 Ribosome biogenesis GTPase [EC:3.6.1.-]Putative ribosome biogenesis GTPase RsgABacillus subtilis 2.40.50.140 73 12 67 2.15 3.21
1luzA00 79.47 Protein K3Vaccinia virus WR 2.40.50.140 82 8 74 3.62 4.86
3i4oA00 79.17 Translation initiation factor IF-1Translation initiation factor IF-1Mycobacterium tuberculosis 2.40.50.140 68 16 69 2.63 3.80
1k3rA02 79.16 Hypothetical proteinMethanothermobacter thermautotrophicus str. Delta HConserved protein 2.40.50.140 59 18 58 1.96 3.35
1c9oA00 79.15 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 24 67 2.86 4.27
2jqoA01 78.94 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 11 69 2.56 3.70
1bkbA02 78.60 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 8 64 2.67 4.11
2r7dA03 78.19 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 11 59 2.53 4.25
1fviA02 77.79 Paramecium bursaria Chlorella virus 1A544R protein 2.40.50.140 82 9 69 3.16 4.57
1ltlA02 77.19 Methanothermobacter thermautotrophicus str. Delta HDNA replication initiator (Cdc21/Cdc54)Replicative DNA helicase Mcm [EC:3.6.1.-] 2.40.50.140 100 14 67 3.24 4.84
2qgqA02 76.99 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 10 56 2.00 3.55
1uebA02 76.62 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 6 63 2.51 3.93
3d31A02 76.28 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 19 48 1.75 3.58
3cp0A00 76.04 Corynebacterium glutamicumMembrane protein implicated in regulation of membrane protease activity 2.40.50.140 62 14 60 2.73 4.50
2ztdA01 74.85 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 71 12 67 3.34 4.98
1uebA03 73.69 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 58 12 50 2.36 4.72
1oxxK02 71.68 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 8 41 1.94 4.68
1vq8A01 70.62 Ribosome50S ribosomal protein L2PHaloarcula marismortuiLarge subunit ribosomal protein L2 2.40.50.140 78 12 39 1.96 4.98
[1]
Displaying entries 1 to 23 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1go3E01
YELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKAIIGKETGKVLEIGDYVRARIVAISLKASKIALTMRQP
YLGKLEWIEEEKAK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1go3E01
YELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKI
ALTMRQPYLGKLEWIEEEKAK
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:40

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"