CATH Domain: 1gnyA00 XML data for domain: 1gnyA00

Molscript image for 1gnyA00
1gnyA00
PDB coordinates for domain 1gnyA00

PDB 1gny, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.260 Galactose-binding domain-like Gene3D
2.60.120.260.21
2.60.120.260.21.1
2.60.120.260.21.1.1
2.60.120.260.21.1.1.1
2.60.120.260.21.1.1.1.1

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Segment boundaries for domain 1gnyA00

Chopping figure for domain 1gnyA00
DomainStart PDB ResidueStop PDB Residue
1gnyA00 91 243

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.60.120.260.21.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gwmA00 80.35 Piromyces equiNon-catalytic protein 1 2.60.120.360 153 7 83 3.26 3.90
1wcuA00 79.83 Piromyces equiNon-catalytic protein 1 2.60.120.360 149 7 84 3.46 4.10
1h6yA00 78.59 Clostridium thermocellumEndo-1,4-beta-xylanase YProtein binding 2.60.120.260 157 7 87 3.46 3.94
1gu3A00 78.45 Cellulomonas fimiEndoglucanase C 2.60.120.260 142 12 83 3.32 3.97
1guiA00 77.98 Thermotoga maritimaLaminarinase 2.60.120.260 155 12 85 3.30 3.88
1i5pA01 76.36 Pesticidal crystal protein cry2AaBacillus thuringiensis serovar kurstaki 2.60.120.260 158 3 77 3.74 4.84
1cx1A00 75.94 Cellulomonas fimiEndoglucanase C 2.60.120.260 153 9 88 4.04 4.54
1p8jA02 75.84 Mus musculusEarly endosomeTrans-Golgi network transport vesicle membraneIntegral to membraneFurin 2.60.120.260 132 11 76 3.48 4.55
1k12A00 75.56 FucolectinCalcium ion bindingFucose bindingRegulation of complement activation, lectin pathwayAnguilla anguilla 2.60.120.260 158 7 79 3.57 4.48
1wmxA00 75.34 Clostridium thermocellumEndoglucanase J 2.60.120.360 173 5 82 3.84 4.65
1uxzA00 75.09 Cellvibrio mixtusCellulase B 2.60.120.260 131 12 78 3.67 4.68
1ji6A02 75.00 Bacillus thuringiensisPesticidal crystal protein cry3Bb 2.60.120.260 162 9 77 3.64 4.72
3k77A00 73.34 DNA repair protein XRCC1Homo sapiensProtein binding 2.60.120.260 152 5 80 3.90 4.85
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gnyA00
GNVVIEVDMANGWRGNASGSTSHSGITYSADGVTFAALGDGVGAVFDIARPTTLEDAVIAMVVNVSAEFKASEANLQIFA
QLKEDWSKGEWDCLAGSSELTADTDLTLTCTIDEDDDKFNQTARDVQVGIQAKGTPAGTITIKSVTITLAQEA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gnyA00
GNVVIEVDMANGWRGNASGSTSHSGITYSADGVTFAALGDGVGAVFDIARPTTLEDAVIAMVVNVSAEFKASEANLQIFA
QLKEDWSKGEWDCLAGSSELTADTDLTLTCTIDEDDDKFNQTARDVQVGIQAKGTPAGTITIKSVTITLAQEA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"