CATH Domain: 1gmxA00 XML data for domain: 1gmxA00

Molscript image for 1gmxA00
1gmxA00
PDB coordinates for domain 1gmxA00

PDB 1gmx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.250 Oxidized Rhodanese; domain 1
3.40.250.10 Oxidized Rhodanese, domain 1 Gene3D
3.40.250.10.8
3.40.250.10.8.1
3.40.250.10.8.1.1
3.40.250.10.8.1.1.1
3.40.250.10.8.1.1.1.1

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Segment boundaries for domain 1gmxA00

Chopping figure for domain 1gmxA00
DomainStart PDB ResidueStop PDB Residue
1gmxA00 1 108

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.250.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2k0zA00 84.10 Helicobacter pyloriPutative uncharacterized protein 3.40.250.10 110 16 90 2.38 2.64
1e0cA02 83.81 Azotobacter vinelandiiThiosulfate sulfurtransferaseThiosulfate sulfurtransferase [EC:2.8.1.1] 3.40.250.10 126 15 81 2.79 3.41
3g5jA00 83.45 Putative ATP/GTP binding proteinTRNA 2-selenouridine synthase [EC:2.9.1.-]Clostridium difficile 630 3.40.250.10 127 15 74 3.05 4.12
1uarA02 83.00 Thermus thermophilus HB8Thiosulfate sulfurtransferaseThiosulfate sulfurtransferase [EC:2.8.1.1] 3.40.250.10 133 20 78 2.63 3.33
1qxnA00 82.86 Wolinella succinogenesSULFIDE DEHYDROGENASE 3.40.250.10 137 22 75 3.32 4.37
1urhA02 81.13 Cysteine and methionine metabolismMetabolic pathways3-mercaptopyruvate sulfurtransferase [EC:2.8.1.2]3-mercaptopyruvate sulfurtransferase activityEscherichia coli K-12 3.40.250.10 114 19 81 3.82 4.68
1okgA02 81.12 3-mercaptopyruvate sulfurtransferase [EC:2.8.1.2]Cysteine and methionine metabolismMercaptopyruvate sulfurtransferaseLeishmania majorMetabolic pathways 3.40.250.10 132 14 74 3.69 4.97
2a2kA00 80.62 Positive regulation of cell proliferationProtein tyrosine phosphatase activityHomo sapiensM-phase inducer phosphatase 2Protein binding 3.40.250.10 171 16 62 2.75 4.39
1okgA01 79.55 3-mercaptopyruvate sulfurtransferase [EC:2.8.1.2]Cysteine and methionine metabolismMercaptopyruvate sulfurtransferaseLeishmania majorMetabolic pathways 3.40.250.10 149 20 67 2.71 4.00
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gmxA00
MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMYHGNSSKGAAQYLLQQ
GYDVVYSIDGGFEAWQRQFPAEVAYGA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gmxA00
MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMXYHGNSSKGAAQYLLQ
QGYDVVYSIDGGFEAWQRQFPAEVAYGA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"