CATH Domain: 1gl2D00 XML data for domain: 1gl2D00

Molscript image for 1gl2D00
1gl2D00
PDB coordinates for domain 1gl2D00

PDB 1gl2, Chain D, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.10
1.20.5.110.10.1
1.20.5.110.10.1.1
1.20.5.110.10.1.1.1
1.20.5.110.10.1.1.1.1

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Segment boundaries for domain 1gl2D00

Chopping figure for domain 1gl2D00
DomainStart PDB ResidueStop PDB Residue
1gl2D00 152 206

Structural Neighbourhood (95 entries)

There are 95 matching structural neighberhood comparisons for CATH ID 1.20.5.110.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 95 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jnmA00 90.03 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 7 91 1.41 1.55
3gwoA00 88.75 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 9 85 2.06 2.42
1a02F00 88.64 Promoter bindingPathways in cancerChagas diseaseProto-oncogene protein c-fosB cell receptor signaling pathway 1.20.5.170 53 3 87 1.48 1.70
1ik7A00 88.03 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 5 87 1.93 2.22
1n2dC00 87.88 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 12 88 2.49 2.80
1jcdB00 87.85 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 9 96 2.66 2.76
1gmjD00 87.68 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 5 94 3.26 3.44
1ci6B00 86.73 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 8 87 2.35 2.70
1ci6A00 86.33 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 9 67 1.06 1.56
3kpeA00 86.24 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 6 75 1.41 1.86
2b9bA04 86.23 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 5 70 2.18 3.07
1gu4A00 86.22 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 81 2.90 3.56
1e5wA04 85.96 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 9 87 2.76 3.16
2e42A00 85.90 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 81 2.92 3.58
1dh3A00 85.88 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 5 87 2.23 2.56
1hf9A00 85.51 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 72 1.33 1.84
1gk4C00 85.36 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 7 77 2.00 2.59
3effK02 85.32 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 6 83 2.23 2.68
1nhlA00 85.26 Vesicle targetingAzurophil granuleCellular membrane fusionSynaptosomal-associated protein 23Protein binding 1.20.5.110 52 7 92 3.31 3.57
1jocA01 85.10 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 11 71 1.47 2.05
1xmeB01 84.84 Cytochrome c oxidase subunit 2Thermus thermophilus 1.20.1070.10 44 9 81 3.08 3.78
2basA02 84.54 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 13 83 2.99 3.59
1r8eA03 84.34 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 9 79 2.35 2.95
3ii6A02 84.07 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 7 93 3.87 4.16
1t3jA00 83.56 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 9 72 2.31 3.18
1tiiC00 83.40 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 11 62 1.17 1.86
1ic2B00 83.03 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 9 70 2.17 3.09
1gk6B00 82.95 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 1 79 2.97 3.73
1nknA00 82.79 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 7 64 1.74 2.68
1d7mA00 82.58 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 14 53 0.71 1.33
2zxeB01 82.57 1.20.5.170 35 11 64 2.58 3.98
2dw3A01 82.55 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 3 94 4.18 4.42
1s5lX00 82.24 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 68 2.45 3.58
1wt6B00 82.01 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 5 58 1.23 2.11
3e7kA00 81.92 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 9 50 0.47 0.94
1czqA00 81.87 1.20.5.170 45 6 55 0.82 1.48
1a2xB00 81.62 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 16 55 0.89 1.60
1g2cB00 81.55 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 12 64 2.41 3.72
1no4C00 81.43 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 7 73 3.17 4.29
2wpqA00 81.23 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 11 54 1.01 1.85
3cx5E01 81.11 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 0 58 1.76 3.02
1sfcH00 81.04 SNARE interactions in vesicular transportSleepRattus norvegicusRegulation of synaptogenesisVoltage-gated potassium channel complex 1.20.5.110 72 14 73 2.48 3.37
1m56D00 81.02 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 4 61 1.39 2.27
2r9iA00 80.75 Putative phage capsid proteinCorynebacterium diphtheriae 1.10.287.80 69 5 65 2.45 3.76
1gd2F00 80.53 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 3 62 2.12 3.39
1qbzA00 80.45 Simian immunodeficiency virusEnvelope glycoprotein 1.10.287.210 102 11 51 0.90 1.73
1mg1A03 80.01 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 11 59 2.68 4.50
1kv4A00 79.99 Moricin-1Bombyx mori 1.20.5.750 42 4 66 2.67 4.00
1l4aA00 79.81 SynaptobrevinLoligo pealei 1.20.5.110 66 5 65 1.71 2.62
2zvoB00 79.78 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 9 61 1.34 2.18
1hj0A00 79.76 Bos taurusThymosin beta-10 1.20.5.520 41 4 75 3.39 4.46
1owaA01 79.63 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 9 59 2.51 4.24
1svfC00 79.62 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 3 59 2.04 3.42
2zjsE00 79.57 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 2 64 1.28 1.97
2r44A01 79.56 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 48 0.64 1.33
1omiA02 79.34 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 14 50 0.77 1.54
1vf5C03 78.95 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 59 1.70 2.87
1favA00 78.84 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 3 65 3.03 4.63
1go9A00 78.81 1.20.5.480 39 5 64 3.06 4.72
3hd7B00 78.77 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 11 55 1.37 2.49
2hr3A01 78.39 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 16 50 1.55 3.10
1dp5B00 78.33 CytoplasmProtease A inhibitor 3Saccharomyces cerevisiaeVacuolar protein catabolic processProtein binding 1.20.5.140 31 3 50 1.10 2.20
1u57A00 78.01 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 6 61 2.39 3.91
1fdoA05 77.96 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 50 1.52 3.04
1s3jB01 77.89 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 10 55 2.16 3.89
1slqF02 77.73 Outer capsid protein VP4Rhesus rotavirus 1.20.5.170 32 12 48 0.90 1.87
1jmmA01 77.70 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 9 55 1.67 3.01
1ifpA00 77.59 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 4 61 2.27 3.71
3efgA00 77.56 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 6 59 2.23 3.76
1nwqA00 77.37 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 5 45 0.75 1.67
1kqfB03 77.02 Two-component systemMetabolic pathwaysGlyoxylate and dicarboxylate metabolismMethane metabolismFormate dehydrogenase activity 1.20.5.480 44 2 53 2.15 4.00
2p7jB01 76.79 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 10 59 2.91 4.91
2ifoA00 76.15 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 2 51 1.45 2.80
1h8bB00 75.52 TitinOryctolagus cuniculus 1.20.5.510 23 0 42 1.65 3.87
2gr7A00 75.27 Haemophilus influenzaeAdhesin 3.30.1300.30 101 7 46 1.82 3.91
2oarE02 75.08 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 27 40 1.41 3.46
2p10B02 74.79 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 3 48 1.88 3.90
2qjyC01 74.29 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 0 48 1.70 3.53
1ozhA03 74.20 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 16 44 1.74 3.92
1mqsB00 73.45 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 3 48 1.50 3.12
1kmiZ01 73.29 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 6 38 0.85 2.19
2pp6A01 72.99 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 38 0.98 2.52
2o01J01 72.18 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 8 42 1.40 3.29
1pp9E01 71.95 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 1 40 1.34 3.30
2b5uA02 71.75 Colicin-E3Escherichia coli 1.10.287.620 161 5 33 1.47 4.38
2oarA02 70.66 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 17 31 0.44 1.40
3c8vA04 70.04 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 10 35 1.02 2.90
2qiwA02 70.00 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 33 0.66 1.98
3g67A00 67.06 Thermotoga maritimaMethyl-accepting chemotaxis protein, putative 1.10.287.950 213 9 25 0.76 3.00
1d66B02 66.23 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 27 0.45 1.62
1mslA02 65.66 1.20.5.220 18 22 33 1.52 4.56
1onvB00 64.23 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 9 33 1.13 3.39
1y2oA00 63.55 CytoplasmProtein C-terminus bindingPlasma membraneHomo sapiensCytoskeletal adaptor activity 1.20.1270.80 240 7 22 1.04 4.62
1mkmA02 60.93 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 21 25 0.65 2.51
1be3K00 59.26 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 4 24 0.82 3.41
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Displaying entries 1 to 95 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gl2D00
DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gl2D00
GSHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"