CATH Domain: 1gl2B00 XML data for domain: 1gl2B00

Molscript image for 1gl2B00
1gl2B00
PDB coordinates for domain 1gl2B00

PDB 1gl2, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.110 Gene3D
1.20.5.110.8
1.20.5.110.8.1
1.20.5.110.8.1.1
1.20.5.110.8.1.1.1
1.20.5.110.8.1.1.1.1

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Segment boundaries for domain 1gl2B00

Chopping figure for domain 1gl2B00
DomainStart PDB ResidueStop PDB Residue
1gl2B00 169 228

Structural Neighbourhood (86 entries)

There are 86 matching structural neighberhood comparisons for CATH ID 1.20.5.110.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 86 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jcdB00 89.47 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 11 86 1.56 1.80
1ci6A00 88.77 Positive regulation of transcription from RNA polymerase II promoterCellular amino acid metabolic processNeurotrophin signaling pathwayActivating transcription factor 4Sequence-specific DNA binding transcription factor activity 1.20.5.170 56 1 94 2.51 2.64
1jnmA00 88.75 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 56 3 84 1.24 1.46
1ybkA00 88.46 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 3 86 1.60 1.85
1gd2F00 88.26 NuA4 histone acetyltransferase complexFungal AP-1-like factorResponse to hydrogen peroxideResponse to methylglyoxalCellular response to oxidative stress 1.20.5.170 64 6 89 1.70 1.91
2e42A00 87.73 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 83 1.53 1.84
1l2pA00 87.70 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 8 90 2.62 2.91
1gu4A00 87.69 Transcription from RNA polymerase II promoterAcute-phase responseHomo sapiensCCAAT/enhancer-binding protein betaImmune response 1.20.5.170 65 3 83 1.52 1.83
1czqA00 86.85 1.20.5.170 45 13 72 0.93 1.28
3kpeA00 86.83 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 8 77 1.37 1.76
1svfC00 86.52 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 13 72 1.17 1.61
1ic2B00 86.42 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 8 76 1.59 2.08
1nwqA00 86.31 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 8 86 3.02 3.48
3gwoA00 86.14 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 5 89 2.77 3.08
1ezjA02 85.75 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 3 88 3.42 3.88
1kilE00 85.70 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 2 69 1.58 2.27
1n2dC00 85.55 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 6 81 2.80 3.44
1r8eA03 84.76 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 11 74 1.40 1.88
1e5wA04 84.68 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 7 88 4.31 4.89
1ik9B02 84.66 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 13 68 1.20 1.75
2w83C00 84.03 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 10 77 2.00 2.58
2basA02 83.80 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 4 77 2.76 3.54
1ci6B00 83.80 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 2 76 3.32 4.35
3ii6A02 83.61 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 8 81 3.24 3.98
2o1kA00 82.80 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 7 69 2.19 3.15
1xmeB01 82.65 Cytochrome c oxidase subunit 2Thermus thermophilus 1.20.1070.10 44 11 61 1.15 1.88
1no4C00 82.64 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 3 61 1.37 2.22
1m56D00 82.42 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 21 67 2.35 3.47
1ik7A00 82.25 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 5 55 1.30 2.32
2b9bA04 82.24 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 5 64 2.95 4.57
3effK02 82.05 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 13 59 1.59 2.68
1jocA01 81.84 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 6 63 1.26 1.99
1gl2A00 81.60 Rattus norvegicusProtein complex assemblyVesicle-associated membrane protein 8Cellular membrane fusionVesicle-associated membrane protein 8 1.20.5.110 53 5 79 2.85 3.58
1tiiC00 81.43 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 0 61 2.11 3.46
2p7jB01 81.04 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 12 50 1.06 2.08
1junA00 81.04 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 6 69 2.36 3.40
2zxeB01 80.92 1.20.5.170 35 8 59 2.11 3.56
1g2cB00 80.83 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 5 67 3.35 4.94
1ifpA00 80.58 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 0 74 3.07 4.12
2zvoB00 80.39 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 8 67 2.03 3.03
1gk6B00 80.22 Positive regulation of RNA polymerase II transcriptional preinitiation complex assemblyIntermediate filamentVimentinCytosolPositive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.170 52 5 59 1.76 2.97
1jekA00 80.12 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 12 67 3.11 4.59
1gk4C00 80.04 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 6 58 2.18 3.72
1dh3A00 79.85 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 9 52 1.00 1.90
2v4hB00 79.77 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 8 64 1.84 2.84
1u57A00 79.73 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 14 72 2.52 3.46
3hd7B00 79.72 Myosin head/neck bindingActomyosinProtein domain specific bindingRattus norvegicusProtein heterodimerization activity 1.20.5.110 98 27 60 1.12 1.86
1mg1A03 79.63 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 8 61 2.04 3.30
1piqA00 79.60 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 9 52 1.28 2.44
1hf9A00 79.59 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 55 1.21 2.16
1kv4A00 79.38 Moricin-1Bombyx mori 1.20.5.750 42 7 59 1.88 3.17
1s5lX00 79.32 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 52 2.26 4.30
1uixA00 79.25 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 0 48 1.10 2.27
1favA00 79.15 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 8 62 1.86 2.96
2ifoA00 79.14 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 0 72 2.51 3.44
1t3jA00 79.06 Mus musculusMitochondrial fusionMitofusin-1Protein binding 1.20.5.110 62 1 48 1.39 2.87
2qjyC01 78.65 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 3 54 1.75 3.23
2hr3A01 78.58 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 49 1.77 3.60
1pfiA00 78.55 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 2 59 1.80 3.03
1d7mA00 77.76 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 13 57 2.76 4.81
1gmjD00 77.57 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 8 47 1.87 3.94
3b8eB00 77.42 Sodium/potassium-transporting ATPase subunit beta-1Sus scrofa 1.20.5.170 46 6 66 2.99 4.52
1vf5C03 77.24 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 3 52 1.56 2.97
1owaA01 77.22 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 9 52 1.59 3.03
2dw3A01 76.61 Intrinsic membrane protein pufXRhodobacter sphaeroides 2.4.1 1.20.5.920 55 1 84 4.18 4.93
1fdoA05 76.32 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 45 1.44 3.15
1a2xB00 76.20 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 6 40 0.81 1.99
1l4aA00 75.18 SynaptobrevinLoligo pealei 1.20.5.110 66 3 48 1.75 3.61
1pl5A00 74.66 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 5 36 0.52 1.44
2gr7A00 74.58 Haemophilus influenzaeAdhesin 3.30.1300.30 101 1 44 1.89 4.24
2r44A01 74.37 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 3 44 0.98 2.22
1bmfG00 74.17 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 13 46 1.89 4.05
1ozhA03 72.90 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 8 40 1.70 4.18
2qxlB06 72.59 Adenyl-nucleotide exchange factor activityHeat shock protein homolog SSE1Protein refoldingHeat shock protein 110kDaATP binding 1.20.1270.10 111 5 34 1.59 4.64
1omiA02 72.43 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 35 0.72 2.02
1be3K00 72.43 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 13 37 1.05 2.82
1kmiZ02 72.27 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.10.287.500 134 3 44 1.57 3.57
2p10B02 72.01 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 19 40 1.97 4.84
2pp6A01 71.10 Salmonella enterica subsp. enterica serovar TyphimuriumGifsy-2 prophage ATP-binding sugar transporter-like protein 1.20.5.110 21 4 35 0.85 2.39
3c8vA04 69.73 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 15 32 0.63 1.96
2oarA02 66.39 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 28 0.90 3.12
3cazA00 65.97 Galdieria sulphurariaBAR protein 1.20.1270.60 202 16 28 1.36 4.74
1mslA02 64.26 1.20.5.220 18 0 30 1.32 4.33
1d66B02 63.15 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 25 0.54 2.12
2qiwA02 59.82 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 16 23 0.70 2.95
1mkmA02 52.52 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 18 0.35 1.88
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Displaying entries 1 to 86 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gl2B00
HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gl2B00
GSHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"