CATH Domain: 1gkpB02 XML data for domain: 1gkpB02

Molscript image for 1gkpB02
1gkpB02
PDB coordinates for domain 1gkpB02

PDB 1gkp, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.140 Metal-dependent hydrolases Gene3D
3.20.20.140.3
3.20.20.140.3.1
3.20.20.140.3.1.1
3.20.20.140.3.1.1.1
3.20.20.140.3.1.1.1.1

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Segment boundaries for domain 1gkpB02

Chopping figure for domain 1gkpB02
DomainStart PDB ResidueStop PDB Residue
1gkpB01 2 53
1gkpB01 383 459
1gkpB02 54 382

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.20.20.140.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kcxA02 89.27 Mus musculusDendriteDihydropyrimidinase-related protein 1Neuronal cell body 3.20.20.140 373 32 87 1.30 1.48
1gkrB02 88.72 L-hydantoinaseArthrobacter aurescens 3.20.20.140 320 26 96 2.52 2.61
2z26B00 79.46 Pyrimidine metabolismMetabolic pathwaysDihydroorotaseDihydroorotase [EC:3.5.2.3]Escherichia coli K-12 3.20.20.140 328 10 85 2.99 3.50
1rk6A02 78.07 D-aminoacylaseAlcaligenes faecalis 3.20.20.140 297 10 75 3.17 4.19
1onwB02 75.63 Isoaspartyl dipeptidaseBeta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]Escherichia coli K-12 3.20.20.140 269 11 74 3.33 4.49
3cjpA00 75.35 Predicted amidohodrolase (Dihydroorotase family)Clostridium acetobutylicum 3.20.20.140 260 10 68 2.86 4.17
1j6oA00 75.27 Thermotoga maritimaTatD DNase family protein [EC:3.1.21.-]Putative uncharacterized protein 3.20.20.140 259 9 70 3.46 4.91
2icsA02 74.72 Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein 3.20.20.140 260 12 70 3.44 4.88
2ffiA00 73.17 Pseudomonas putida KT24402-pyrone-4,6-dicarboxylic acid hydrolase, putative 3.20.20.140 268 11 70 3.53 4.99
2f6kA00 73.01 Metal-dependent hydrolase (Putative)Lactobacillus plantarum 3.20.20.140 300 9 78 3.89 4.98
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gkpB02
GFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEK
TEGQLREIVADGISSFIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPE
AVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRDK
RNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKL
FGLFPRKG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gkpB02
GFIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEK
TEGQLREIVADGISSFXIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRP
EAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGVEAMKYIMSPPLRD
KRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAK
LFGLFPRKG
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:21

Cut based on decision in database "DomChop" on "cathdb"