CATH Domain: 1gkpB01 XML data for domain: 1gkpB01

Molscript image for 1gkpB01
1gkpB01
PDB coordinates for domain 1gkpB01

PDB 1gkp, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.2
2.30.40.10.2.1
2.30.40.10.2.1.1
2.30.40.10.2.1.1.1
2.30.40.10.2.1.1.1.1

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Segment boundaries for domain 1gkpB01

Chopping figure for domain 1gkpB01
DomainStart PDB ResidueStop PDB Residue
1gkpB01 2 53
1gkpB01 383 459
1gkpB02 54 382

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 2.30.40.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gkpA01 89.62 HydrolaseThermus sp. 2.30.40.10 81 100 62 0.39 0.62
1gkrB01 87.93 L-hydantoinaseArthrobacter aurescens 2.30.40.10 130 28 95 1.80 1.89
1onwA01 85.03 Isoaspartyl dipeptidaseBeta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]Escherichia coli K-12 2.30.40.10 110 23 73 3.30 4.48
2gwnA01 84.05 Pyrimidine metabolismDihydroorotaseDihydroorotase [EC:3.5.2.3]Porphyromonas gingivalisMetabolic pathways 2.30.40.10 96 28 66 1.84 2.76
1kcxA01 83.52 Mus musculusDendriteDihydropyrimidinase-related protein 1Neuronal cell body 2.30.40.10 103 34 68 1.77 2.59
1gkrA01 82.98 L-hydantoinaseArthrobacter aurescens 2.30.40.10 87 31 65 1.86 2.82
1rk6A01 82.74 D-aminoacylaseAlcaligenes faecalis 2.30.40.10 87 28 62 1.58 2.52
2vhlB01 82.38 Amino sugar and nucleotide sugar metabolismN-acetylglucosamine-6-phosphate deacetylaseBacillus subtilisN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 23 68 2.61 3.83
1yrrA01 80.65 Amino sugar and nucleotide sugar metabolismEscherichia coli O157:H7N-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 20 65 2.52 3.87
1ejxC01 76.93 Arginine and proline metabolismKlebsiella aerogenesPurine metabolismUrease alpha subunit [EC:3.5.1.5]Atrazine degradation 2.30.40.10 185 24 51 2.27 4.42
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gkpB01
PLLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPTIAVGSDADLVVYDPQYRGTISVKTQHV
NNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMYF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gkpB01
PLLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPTIAVGSDADLVVYDPQYRGTISVKTQHV
NNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMYF
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:21

Cut based on decision in database "DomChop" on "cathdb"