CATH Domain: 1gkpA01 XML data for domain: 1gkpA01

Molscript image for 1gkpA01
1gkpA01
PDB coordinates for domain 1gkpA01

PDB 1gkp, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.8
2.30.40.10.8.1
2.30.40.10.8.1.1
2.30.40.10.8.1.1.1
2.30.40.10.8.1.1.1.1

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Segment boundaries for domain 1gkpA01

Chopping figure for domain 1gkpA01
DomainStart PDB ResidueStop PDB Residue
1gkpA01 2 53
1gkpA01 389 396
1gkpA01 424 444
1gkpA02 54 383
1gkpA02 399 423

Structural Neighbourhood (15 entries)

There are 15 matching structural neighberhood comparisons for CATH ID 2.30.40.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 15 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gkrA01 88.78 L-hydantoinaseArthrobacter aurescens 2.30.40.10 87 29 93 2.21 2.37
2gwnA01 87.47 Pyrimidine metabolismDihydroorotaseDihydroorotase [EC:3.5.2.3]Porphyromonas gingivalisMetabolic pathways 2.30.40.10 96 30 80 1.51 1.88
2vhlB01 86.77 Amino sugar and nucleotide sugar metabolismN-acetylglucosamine-6-phosphate deacetylaseBacillus subtilisN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 23 86 2.72 3.13
1o12A01 85.77 Amino sugar and nucleotide sugar metabolismThermotoga maritimaN-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 72 16 79 3.87 4.90
2qt3A01 85.72 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 2.30.40.10 100 30 78 1.48 1.90
1kcxA01 85.51 Mus musculusDendriteDihydropyrimidinase-related protein 1Neuronal cell body 2.30.40.10 103 38 70 1.30 1.83
3feqA01 85.16 2.30.40.10 105 28 71 1.64 2.30
1yrrA01 85.01 Amino sugar and nucleotide sugar metabolismEscherichia coli O157:H7N-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 18 82 2.57 3.11
3be7A01 83.79 2.30.40.10 95 27 75 1.98 2.61
2qs8A01 83.02 2.30.40.10 99 23 75 2.13 2.81
2pajA01 82.92 2.30.40.10 119 33 64 1.53 2.36
2icsA01 82.88 Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein 2.30.40.10 100 24 70 1.88 2.69
1gkrB01 81.44 L-hydantoinaseArthrobacter aurescens 2.30.40.10 130 32 62 1.87 3.00
2imrA01 76.61 Uncharacterized protein DR_0824Deinococcus radiodurans 2.30.40.10 69 11 70 3.51 4.99
1ejxC01 74.80 Arginine and proline metabolismKlebsiella aerogenesPurine metabolismUrease alpha subunit [EC:3.5.1.5]Atrazine degradation 2.30.40.10 185 33 43 1.66 3.79
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Displaying entries 1 to 15 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gkpA01
PLLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPDADLVVYDGRPSVVTVRGKVAVRDGQFV
G
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gkpA01
PLLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPDADLVVYDGRPSVVTVRGKVAVRDGQFV
G
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 16:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"