CATH Domain: 1gkmA01 XML data for domain: 1gkmA01

Molscript image for 1gkmA01
1gkmA01
PDB coordinates for domain 1gkmA01

PDB 1gkm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.275 Fumarase C; Chain B, domain 1
1.10.275.10 Fumarase/aspartase (N-terminal domain) Gene3D
1.10.275.10.1
1.10.275.10.1.1
1.10.275.10.1.1.1
1.10.275.10.1.1.1.1
1.10.275.10.1.1.1.1.1

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Segment boundaries for domain 1gkmA01

Chopping figure for domain 1gkmA01
DomainStart PDB ResidueStop PDB Residue
1gkmA01 1 196
1gkmA02 197 508

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 1.10.275.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1y2mD01 86.38 Rhodosporidium toruloidesPhenylalanine ammonia-lyase 1.10.275.10 216 28 78 1.43 1.83
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gkmA01
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLV
LSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEG
KARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gkmA01
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLV
LSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGEG
KARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"