CATH Domain: 1gk4C00 XML data for domain: 1gk4C00

Molscript image for 1gk4C00
1gk4C00
PDB coordinates for domain 1gk4C00

PDB 1gk4, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.21
1.20.5.170.21.1
1.20.5.170.21.1.1
1.20.5.170.21.1.1.1
1.20.5.170.21.1.1.1.1

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Segment boundaries for domain 1gk4C00

Chopping figure for domain 1gk4C00
DomainStart PDB ResidueStop PDB Residue
1gk4C00 337 406

Structural Neighbourhood (50 entries)

There are 50 matching structural neighberhood comparisons for CATH ID 1.20.5.170.21.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 50 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wt6B00 91.51 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 16 95 1.29 1.35
1nknA00 87.95 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 15 94 2.64 2.79
1l2pA00 87.05 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 13 82 2.29 2.76
1jocA01 86.53 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 11 72 0.90 1.24
1gmjD00 86.09 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 8 80 1.66 2.08
1pl5A00 86.03 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 8 85 2.33 2.73
2b9bA04 84.61 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 19 88 3.68 4.15
1ic2B00 84.18 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 7 84 3.94 4.67
1ik9B02 83.87 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 11 63 1.25 1.96
1ybkA00 83.50 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 13 74 2.79 3.76
2wpqA00 83.08 Salmonella enterica subsp. enterica serovar TyphimuriumPutative inner membrane protein 1.20.5.980 99 14 66 1.26 1.89
1jekA00 82.70 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 7 57 1.18 2.06
1ezjA02 82.11 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 9 71 2.76 3.86
3kpeA00 81.19 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 8 67 2.60 3.87
1tiiC00 80.40 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 8 51 1.90 3.69
3effK02 80.32 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 13 62 2.33 3.71
2v4hB00 80.22 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 91 14 76 3.15 4.09
1hf9A00 80.21 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 7 58 1.24 2.12
3cx5E01 80.20 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 1 57 1.81 3.17
1uixA00 80.08 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 10 64 2.66 4.14
2ifoA00 80.03 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 6 65 2.53 3.85
1no4C00 79.97 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 5 68 2.95 4.31
1kilE00 79.71 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 12 58 2.17 3.70
3e7kA00 79.19 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 5 57 2.31 4.04
1r8eA03 78.37 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 13 55 2.09 3.75
1junA00 78.32 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 9 60 2.67 4.45
2zxeB01 78.09 1.20.5.170 35 14 47 1.62 3.44
1htmD00 78.07 HemagglutininInfluenza A virus (A/Aichi/2/1968(H3N2)) 3.90.20.10 123 2 46 1.13 2.44
1n2dC00 77.89 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 6 45 1.96 4.29
1ik7A00 77.79 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 7 48 1.37 2.82
1ij5A01 76.70 Physarum polycephalumPlasmodial-specific protein LAV1-2 1.20.58.90 75 8 54 2.31 4.23
1dipB01 76.42 Sus scrofaTSC22 domain family protein 3 1.20.5.490 45 4 48 1.61 3.31
1kv4A00 76.23 Moricin-1Bombyx mori 1.20.5.750 42 11 60 2.75 4.58
2hr3A01 75.12 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 6 42 1.76 4.11
1vf5C03 75.04 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 12 45 1.41 3.08
2qjyC01 74.32 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 47 1.98 4.20
3gwoA00 74.26 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 5 44 2.16 4.88
1go9A00 73.42 1.20.5.480 39 15 47 2.29 4.86
1fdoA05 73.31 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 18 38 1.43 3.71
1aa0A00 72.66 Enterobacteria phage T4Fibritin 1.20.5.320 113 14 46 1.62 3.52
2r44A01 72.37 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 37 0.89 2.40
3ii6A02 72.22 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 5 47 1.97 4.18
1omiA02 71.07 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 35 1.70 4.76
1ozhA03 70.48 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 8 34 1.68 4.90
2oarE02 70.23 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 13 31 1.24 3.95
2oarA02 65.97 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 17 24 0.37 1.52
3c8vA04 64.81 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 27 0.91 3.35
2qiwA02 64.01 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 25 0.71 2.76
1d66B02 59.69 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 21 0.44 2.05
1mkmA02 57.30 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 20 0.58 2.90
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Displaying entries 1 to 50 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gk4C00
NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gk4C00
CEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGE
ESRI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"