CATH Domain: 1ghjA00 XML data for domain: 1ghjA00

Molscript image for 1ghjA00
1ghjA00
PDB coordinates for domain 1ghjA00

PDB 1ghj, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.16
2.40.50.100.16.1
2.40.50.100.16.1.1
2.40.50.100.16.1.1.1
2.40.50.100.16.1.1.1.1

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Segment boundaries for domain 1ghjA00

Chopping figure for domain 1ghjA00
DomainStart PDB ResidueStop PDB Residue
1ghjA00 1 79

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.40.50.100.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1iyuA00 86.62 Azotobacter vinelandiiDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 79 24 96 1.89 1.96
1labA00 84.58 Geobacillus stearothermophilusDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 80 31 98 3.07 3.11
1fycA00 73.27 Citrate cycle (TCA cycle)Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]Glycolysis / GluconeogenesisPyruvate metabolismHomo sapiens 2.40.50.100 106 29 74 2.88 3.86
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ghjA00
AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ghjA00
AIDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEGG
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ghj000" to "1ghjA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:51

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"