CATH Domain: 1gdtA03 XML data for domain: 1gdtA03

Molscript image for 1gdtA03
1gdtA03
PDB coordinates for domain 1gdtA03

PDB 1gdt, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.60 Homeodomain-like Gene3D
1.10.10.60.60
1.10.10.60.60.1
1.10.10.60.60.1.1
1.10.10.60.60.1.1.1
1.10.10.60.60.1.1.1.2

[top]
Segment boundaries for domain 1gdtA03

Chopping figure for domain 1gdtA03
DomainStart PDB ResidueStop PDB Residue
1gdtA01 1 98
1gdtA02 99 140
1gdtA03 141 183

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.10.10.60.60.1.1.1.2 (SIMAX score < 5)

[1]
Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1o4xA02 83.38 Sequence-specific DNA binding transcription factor activityPOU domain transcription factor, class 2Negative regulation of transcription, DNA-dependentSequence-specific DNA bindingTranscription repressor activity 1.10.10.60 53 8 79 3.01 3.80
2dmqA01 80.73 LIM/homeobox protein Lhx9Homo sapiens 1.10.10.60 57 2 70 2.59 3.69
1iv6A00 80.04 Positive regulation of mitotic cell cycleProtein homooligomerizationNegative regulation of telomerase activityTelomere maintenance via telomere shorteningG2/M transition of mitotic cell cycle 1.10.10.60 57 4 78 3.28 4.15
2k9nA02 79.63 MYB24Trichomonas vaginalis 1.10.10.60 54 8 72 2.16 2.99
1fexA00 79.35 Protein bindingTelomeric repeat-binding factor 2-interacting protein 1Protection from non-homologous end joining at telomereNegative regulation of telomere maintenanceCytoplasm 1.10.10.60 59 8 71 2.93 4.12
1bobA03 78.19 Chromatin silencing at telomereHistone acetyltransferase 1 [EC:2.3.1.48]Histone acetyltransferase type B catalytic subunitHistone acetyltransferase activityProtein binding 1.10.10.390 54 4 72 3.59 4.97
2jn6A01 76.29 Corynebacterium glutamicumPutative uncharacterized protein Cgl2762 1.10.10.60 85 11 47 2.10 4.46
[1]
Displaying entries 1 to 7 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1gdtA03
GRKRKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1gdtA03
GRKRKIDRDAVLNMWQQGLGASHISKTMNIARSTVYKVINESN
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:38

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"