CATH Domain: 1gcyA01 XML data for domain: 1gcyA01

Molscript image for 1gcyA01
1gcyA01
PDB coordinates for domain 1gcyA01

PDB 1gcy, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.13
3.20.20.80.13.1
3.20.20.80.13.1.1
3.20.20.80.13.1.1.1
3.20.20.80.13.1.1.1.1

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Segment boundaries for domain 1gcyA01

Chopping figure for domain 1gcyA01
DomainStart PDB ResidueStop PDB Residue
1gcyA01 1 360
1gcyA02 362 417

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.20.20.80.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mxgA01 85.40 Pyrococcus furiosusAlpha amylase 3.20.20.80 337 24 82 3.38 4.09
1ua7A01 80.78 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 3.20.20.80 344 16 84 3.80 4.49
2guyA01 80.27 Starch and sucrose metabolismAlpha-amylase [EC:3.2.1.1]Aspergillus oryzaeAlpha-amylase A type-1/2Metabolic pathways 3.20.20.80 374 17 83 3.55 4.24
1j0hA02 79.39 NeopullulanaseGeobacillus stearothermophilus 3.20.20.80 326 13 74 3.06 4.09
1hx0A01 79.34 Starch and sucrose metabolismSus scrofaAlpha-amylase [EC:3.2.1.1]Pancreatic alpha-amylaseMetabolic pathways 3.20.20.80 402 16 75 3.26 4.34
1m7xD02 78.70 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 3.20.20.80 359 12 79 3.10 3.92
3bmvA01 78.36 Cyclomaltodextrin glucanotransferaseThermoanaerobacterium thermosulfurigenes 3.20.20.80 399 16 79 3.55 4.45
3edfA02 77.82 CyclomaltodextrinaseFlavobacterium sp. 92 3.20.20.80 419 15 75 3.71 4.89
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gcyA01
DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSKSGGGEGYFWHDF
NKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGDADL
NTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQIIK
DWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYAYIL
TSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRAD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gcyA01
DQAGKSPNAVRYHGGDEIILQGFHWNVVREAPNDWYNILRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFW
HDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPNHMNRGYPDKEINLPAGQGFWRNDCADPGNYPNDCDDGDRFIGGD
ADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWDWRNTASWQQ
IIKDWSDRAKCPVFDFALKERMQNGSIADWKHGLNGNPDPRWREVAVTFVDNHDTGYSPGQNGGQHHWALQDGLIRQAYA
YILTSPGTPVVYWDHMYDWGYGDFIRQLIQVRRAAGVRAD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:37

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"