CATH Domain: 1gaxA05 XML data for domain: 1gaxA05

Molscript image for 1gaxA05
1gaxA05
PDB coordinates for domain 1gaxA05

PDB 1gax, Chain A, Domain 5

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.380 Gene3D
1.10.287.380.1
1.10.287.380.1.1
1.10.287.380.1.1.1
1.10.287.380.1.1.1.1
1.10.287.380.1.1.1.1.1

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Segment boundaries for domain 1gaxA05

Chopping figure for domain 1gaxA05
DomainStart PDB ResidueStop PDB Residue
1gaxA01 23 174
1gaxA01 344 529
1gaxA02 1 22
1gaxA02 535 739
1gaxA03 190 342
1gaxA04 740 789
1gaxA05 790 862

Structural Neighbourhood (22 entries)

There are 22 matching structural neighberhood comparisons for CATH ID 1.10.287.380.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 22 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1skvA00 88.58 Protein D-63Sulfolobus virus 1 1.10.287.660 62 9 82 1.57 1.91
1z0pA00 87.03 Streptococcus pyogenes serotype M1Putative uncharacterized protein 1.20.58.90 73 8 86 2.58 2.99
3csxB00 86.83 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 71 11 95 2.99 3.12
2fb5A01 86.36 Bacillus cereus ATCC 14579Hypothetical Membrane Spanning Protein 1.10.287.770 72 6 91 3.31 3.61
1wb7A01 86.18 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 7 86 1.87 2.17
1bsmA01 85.82 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 15 86 2.09 2.42
3csxA00 85.67 Cyanothece sp. ATCC 51142DUF683-containing protein 1.10.287.660 61 11 82 2.37 2.88
1p49A02 85.17 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 8 76 2.33 3.04
3bz1Z00 84.88 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 3 79 1.96 2.47
1ku9A02 83.51 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 7 75 3.46 4.59
3fx7A00 83.05 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 12 80 2.69 3.33
1b04A03 82.36 Geobacillus stearothermophilusDNA ligase 1.10.287.610 62 16 73 3.47 4.69
1o9gA02 81.35 RRNA methyltransferase AviRaStreptomyces viridochromogenes 1.10.287.540 43 11 58 2.24 3.80
1lvfB00 81.26 Rattus norvegicusSyntaxin-6Syntaxin 6SNARE interactions in vesicular transport 1.20.58.90 104 13 60 1.73 2.86
1fpoC02 81.05 Co-chaperone protein hscBMolecular chaperone HscBEscherichia coli K-12 1.20.1280.20 91 6 62 2.31 3.69
1rsoA01 80.14 Basal plasma membraneRattus norvegicusPresynaptic membranePostsynaptic membraneProtein C-terminus binding 1.10.287.470 51 5 67 2.31 3.44
3bhpB00 79.44 Bacillus subtilisUPF0291 protein ynzC 1.10.287.540 46 15 54 1.91 3.49
1g6uA00 78.90 1.10.287.540 47 17 60 2.25 3.73
1hs7A00 78.30 SNAP receptor activitySyntaxin 7Vesicle fusionSyntaxin VAM3Golgi to vacuole transport 1.20.58.70 97 2 65 3.19 4.83
1t72D01 77.62 Phosphate transport system protein phoU homologPhosphate transport system proteinAquifex aeolicus 1.20.58.220 100 10 65 3.01 4.63
2oyqA04 77.06 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 2 60 2.82 4.68
1nt2B02 75.83 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 11 63 2.73 4.33
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Displaying entries 1 to 22 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1gaxA05
MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1gaxA05
MPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREALSQIG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:08

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:37

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"