Set cath from cathlist by auto on 05 Mar 2006 18:22
This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"
CATH Domain: 1g9gA01
1g9gA01
PDB 1g9g, Chain A, Domain 1
| CATH Code | Level Description | Links |
|---|---|---|
 1
| Mainly Alpha | |
 1.50
| Alpha/alpha barrel | |
 1.50.10
| Glycosyltransferase | |
 1.50.10.10
| Gene3D | |
 1.50.10.10.6
| ||
 1.50.10.10.6.1
| ||
 1.50.10.10.6.1.1
| ||
 1.50.10.10.6.1.1.1
| ||
 1.50.10.10.6.1.1.1.1
|
Segment boundaries for domain 1g9gA01
| Domain | Start PDB Residue | Stop PDB Residue |
|---|---|---|
| 1g9gA01 | 1 | 89 |
| 1g9gA01 | 137 | 152 |
| 1g9gA01 | 227 | 298 |
| 1g9gA01 | 315 | 540 |
| 1g9gA01 | 607 | 628 |
| 1g9gA02 | 90 | 136 |
| 1g9gA02 | 153 | 226 |
| 1g9gA02 | 300 | 314 |
| 1g9gA03 | 541 | 606 |
Structural Neighbourhood (1 entries)
There are 1 matching structural neighberhood comparisons for CATH ID 1.50.10.10.6.1.1.1.1 (SIMAX score < 5)
[1]
Displaying entries 1 to 1 (page 1 of 1)
| Match Depth | Match | SSAP score | Match Keywords | Match Superfamily | Length | Sequence Id | Overlap | RMSD | SIMAX |
|---|---|---|---|---|---|---|---|---|---|
|
1nc5A00 | 73.77 | 1.50.10.10 | 363 | 7 | 71 | 3.46 | 4.85 |
[1]
Displaying entries 1 to 1 (page 1 of 1)
Domain ATOM Sequence
>pdb|1g9gA01 ASSPANKVYQDRFESMYSKIKDPANGYFSEQGIPYHSIETLMVEAPDYGHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKS WSVTEQYLINSQLTSAYGTSMLYGMNAPDADARAVQATYWADQWAKEQGKSVSTSVGKATKMGDYLRYSFFDKYFRKIGQ PSQAGTGYDAAHYLLSWGSSHNHFGYQNPFAAWVLSTDANFKPKSSNGASDWAKSLDRQLEFYQWLQSAEGAIAGGATNS WNGRYEAVPSGTSTFYGMGYVENPVYADPGSNTWFGMQVWSMQRVAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTF QIPSTIDWEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSKG ISTLHRFWAQSEFAVANGVYAILFP
Domain COMBS Sequence
>pdb|1g9gA01 ASSPANKVYQDRFESMYSKIKDPANGYFSEQGIPYHSIETLMVEAPDYGHVTTSEAMSYYMWLEAMHGRFSGDFTGFDKS WSVTEQYLINSQLTSAYGTSMLYGMNAPDADARAVQATYWADQWAKEQGKSVSTSVGKATKMGDYLRYSFFDKYFRKIGQ PSQAGTGYDAAHYLLSWGSSHNHFGYQNPFAAWVLSTDANFKPKSSNGASDWAKSLDRQLEFYQWLQSAEGAIAGGATNS WNGRYEAVPSGTSTFYGMGYVENPVYADPGSNTWFGMQVWSMQRVAELYYKTGDARAKKLLDKWAKWINGEIKFNADGTF QIPSTIDWEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSKG ISTLHRFWAQSEFAVANGVYAILFP
Domain History Events (3)
Flow stage update by auto on 05 Mar 2006 18:22
This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"
Insertion by auto on 05 Mar 2006 16:37
PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"
