CATH Domain: 1g8iB02 XML data for domain: 1g8iB02

Molscript image for 1g8iB02
1g8iB02
PDB coordinates for domain 1g8iB02

PDB 1g8i, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.15
1.10.238.10.15.1
1.10.238.10.15.1.1
1.10.238.10.15.1.1.1
1.10.238.10.15.1.1.1.1

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Segment boundaries for domain 1g8iB02

Chopping figure for domain 1g8iB02
DomainStart PDB ResidueStop PDB Residue
1g8iB01 12 96
1g8iB02 97 187

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 1.10.238.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2f3yA02 86.05 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 26 72 2.10 2.90
1ggzA01 85.95 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 21 80 2.97 3.70
1g4yR01 85.39 Calcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathwayOocyte meiosisGnRH signaling pathway 1.10.238.10 80 20 80 3.00 3.74
1dtlA02 84.96 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 28 69 1.54 2.22
1qtxA02 84.87 1.10.238.10 68 23 72 2.20 3.03
1wdcB01 83.79 Myosin regulatory light chain, striated adductor muscleArgopecten irradians 1.10.238.10 70 15 72 2.39 3.30
1fi5A00 83.44 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 81 25 75 2.44 3.22
1g33A00 83.38 Rattus norvegicusParvalbumin alpha 1.10.238.10 73 21 78 3.64 4.67
1wrkA00 82.12 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 13 75 2.58 3.40
1jfjA01 81.32 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 22 69 2.43 3.51
1snlA00 81.11 ER-Golgi intermediate compartmentDNA bindingNucleobindin-1Golgi apparatusHomo sapiens 1.10.238.10 99 17 79 3.91 4.90
1tizA00 80.52 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 18 72 2.84 3.92
1jfjA02 78.42 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 71 29 68 2.14 3.14
2os8B01 78.14 Myosin regulatory light chainPlacopecten magellanicus 1.10.238.10 65 16 71 2.80 3.92
1k90E01 76.89 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 21 80 3.98 4.96
1yr5A00 76.34 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 146 19 46 2.05 4.40
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1g8iB02
LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKAD
PSIVQALSLYD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1g8iB02
LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKAD
PSIVQALSLYD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:06

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:37

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"