CATH Domain: 1g5hB02 XML data for domain: 1g5hB02

Molscript image for 1g5hB02
1g5hB02
PDB coordinates for domain 1g5hB02

PDB 1g5h, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.800 Gene3D
3.40.50.800.2
3.40.50.800.2.1
3.40.50.800.2.1.1
3.40.50.800.2.1.1.1
3.40.50.800.2.1.1.1.1

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Segment boundaries for domain 1g5hB02

Chopping figure for domain 1g5hB02
DomainStart PDB ResidueStop PDB Residue
1g5hB01 40 353
1g5hB02 354 460

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.40.50.800.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hc7A02 89.51 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Prolyl-tRNA synthetase [EC:6.1.1.15]Prolyl-tRNA synthetase 3.40.50.800 104 23 91 1.65 1.81
1atiB02 88.03 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Glycyl-tRNA synthetase [EC:6.1.1.14]Glycine-tRNA ligase activityProtein dimerization activity 3.40.50.800 112 25 83 1.75 2.11
1h4vB02 87.82 Aminoacyl-tRNA biosynthesisThermus thermophilus HB27Histidyl-tRNA synthetaseHistidyl-tRNA synthetase [EC:6.1.1.21] 3.40.50.800 95 11 84 1.87 2.21
1httA02 87.33 Aminoacyl-tRNA biosynthesisHistidyl-tRNA synthetaseHistidyl-tRNA synthetase [EC:6.1.1.21]Escherichia coli K-12 3.40.50.800 98 11 87 1.87 2.14
3ialA02 86.80 Aminoacyl-tRNA biosynthesisProlyl-tRNA synthetase [EC:6.1.1.15]Giardia lamblia ATCC 50803Prolyl-tRNA synthetase 3.40.50.800 119 17 79 1.73 2.17
1qe0A02 86.18 Aminoacyl-tRNA biosynthesisHistidyl-tRNA synthetaseHistidyl-tRNA synthetase [EC:6.1.1.21]Staphylococcus aureus 3.40.50.800 91 16 82 1.97 2.39
2zt5A03 85.31 Glycine-tRNA ligase activityProtein dimerization activitySoluble fractionHomo sapiensGlycyl-tRNA synthetase 3.40.50.800 121 21 81 3.20 3.91
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1g5hB02
PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDESVLFSVLVTETTLENGLIQLRSRDT
TKEHISKLRDFLVKYLASASNVA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1g5hB02
PIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQLHSKYDEXSVLFSVLVTETTLENGLIQLRSRD
TTXKEXXHISKLRDFLVKYLASASNVAAALDHHHHHH
BLAST against CATH

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Domain History Events (7)

Domain assigned by lewis on 09 Jan 2007 13:16

Assigning domain 1g5hB02 to 3.40.50.800 (as agreed with the CATH update team) after the chain has been rechopped. The reason is that the domain is very similar to the old domain 1g5hB03 (from the previous chopping at "Sun Mar 5 16:36:54 2006") which was in 3.40.50.800 at the time the chain was unchopped.

Flow stage update by auto on 08 Dec 2006 13:19

No satisfactory AssignClose result found.

Flow stage update by auto on 08 Dec 2006 13:17

NW result present for Domain "1g5hB02"

Flow stage update by auto on 08 Dec 2006 13:17

No in_process hits for Domain "1g5hB02" ready to be processed

Flow stage update by auto on 07 Dec 2006 17:18

All required files are present for Domain "1g5hB02"

Flow stage update by auto on 07 Dec 2006 13:16

Beginning processing for Domain "1g5hB02"

Insertion by auto on 07 Dec 2006 13:16

Final ChopClose added based on similarity with "1g5iB"