CATH Domain: 1g4yR01 XML data for domain: 1g4yR01

Molscript image for 1g4yR01
1g4yR01
PDB coordinates for domain 1g4yR01

PDB 1g4y, Chain R, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.238 Recoverin; domain 1
1.10.238.10 EF-hand Gene3D
1.10.238.10.18
1.10.238.10.18.1
1.10.238.10.18.1.1
1.10.238.10.18.1.1.1
1.10.238.10.18.1.1.1.1

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Segment boundaries for domain 1g4yR01

Chopping figure for domain 1g4yR01
DomainStart PDB ResidueStop PDB Residue
1g4yR01 1 80
1g4yR02 81 143

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 1.10.238.10.18.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ggzA01 93.30 Calcium ion bindingOlfactory transductionCalcium signaling pathwayPhosphatidylinositol signaling systemInsulin signaling pathway 1.10.238.10 76 85 95 1.78 1.87
2f3yA02 91.28 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 68 45 85 1.24 1.46
1wrkA00 91.00 Cardiac muscle contractionCalcium signaling pathwayDilated cardiomyopathyHypertrophic cardiomyopathy (HCM)Calcium ion binding 1.10.238.10 82 62 92 2.45 2.64
1fi5A00 88.70 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 81 27 93 4.32 4.60
1wdcB01 88.31 Myosin regulatory light chain, striated adductor muscleArgopecten irradians 1.10.238.10 70 34 87 1.93 2.21
1dtlA02 88.02 Cardiac muscle contractionCalcium signaling pathwayTroponin C, slow skeletal and cardiac musclesGallus gallusTroponin C, slow skeletal and cardiac muscles 1.10.238.10 63 31 78 1.78 2.26
1g33A00 86.89 Rattus norvegicusParvalbumin alpha 1.10.238.10 73 27 87 2.92 3.34
1qx2A00 85.56 Protein S100-GBos taurus 1.10.238.10 75 34 88 4.22 4.75
1qasA01 84.03 Calcium ion bindingPhosphatidylinositol signaling systemCalcium signaling pathwayRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 88 15 87 3.65 4.17
1tizA00 82.91 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 27 82 2.96 3.59
2os8B01 82.12 Myosin regulatory light chainPlacopecten magellanicus 1.10.238.10 65 36 81 2.17 2.67
1eg3A04 82.09 Cell surfaceCostamereCytoskeletonDystrophin-associated glycoprotein complexActin binding 1.10.238.10 82 12 84 4.08 4.85
1jfjA01 81.57 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 63 30 78 2.75 3.49
1k90E01 79.46 Phosphatidylinositol signaling systemCalcium signaling pathwayOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 74 100 92 4.02 4.35
1jfjA02 79.35 Entamoeba histolyticaCalcium-binding protein 1.10.238.10 71 23 86 3.72 4.31
1s26D01 78.07 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 100 73 3.67 4.98
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1g4yR01
ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1g4yR01
ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:05

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:36

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"