CATH Domain: 1g1tA01 XML data for domain: 1g1tA01

Molscript image for 1g1tA01
1g1tA01
PDB coordinates for domain 1g1tA01

PDB 1g1t, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.13
3.10.100.10.13.1
3.10.100.10.13.1.1
3.10.100.10.13.1.1.1
3.10.100.10.13.1.1.1.1

[top]
Segment boundaries for domain 1g1tA01

Chopping figure for domain 1g1tA01
DomainStart PDB ResidueStop PDB Residue
1g1tA01 1 119
1g1tA02 120 157

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.10.100.10.13.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1eslA00 93.35 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 100 75 0.23 0.30
1kza100 89.72 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 26 90 1.92 2.12
1h8uB00 89.03 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 21 91 1.78 1.94
1jznA00 87.40 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 22 84 1.91 2.26
1byfA00 87.02 LectinPolyandrocarpa misakiensis 3.10.100.10 123 23 92 2.63 2.84
1tn3A00 86.71 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 135 24 82 1.83 2.21
3g8kA00 86.68 Mus musculusPlasma membraneLectin-related NK cell receptor LY49L1 3.10.100.10 127 17 82 2.49 3.01
1hq8A00 86.28 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 19 83 1.92 2.29
3bdwA00 85.95 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 22 84 2.58 3.05
1rtm100 84.68 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 26 72 2.04 2.81
1rjhA00 83.97 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 22 89 2.66 2.99
1sl6A00 82.94 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 29 66 2.03 3.07
3fd4A00 80.31 Glycoprotein 42Human herpesvirus 4 (strain B95-8) 3.10.100.10 140 11 72 2.47 3.39
1cwvA05 79.70 InvasinYersinia pseudotuberculosis 3.10.100.10 100 12 68 2.64 3.88
1f00I03 78.95 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 13 72 3.13 4.33
2pf5D00 76.69 Cell-cell signalingHyaluronic acid bindingHomo sapiensTumor necrosis factor-inducible gene 6 proteinSignal transduction 3.10.100.10 91 17 64 2.99 4.62
[1]
Displaying entries 1 to 16 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1g1tA01
WSYNTSTEAMTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRKVNNVWVWVGTQKPLTEEAKNWAPGE
PNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCYT
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1g1tA01
WSYNTSTEAMTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYWIGIRKVNNVWVWVGTQKPLTEEAKNWAPGE
PNNRQKDEDCVEIYIKREKDVGMWNDERCSKKKLALCYT
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:36

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"