CATH Domain: 1g1kA00 XML data for domain: 1g1kA00

Molscript image for 1g1kA00
1g1kA00
PDB coordinates for domain 1g1kA00

PDB 1g1k, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.680 Gene3D
2.60.40.680.4
2.60.40.680.4.1
2.60.40.680.4.1.1
2.60.40.680.4.1.1.1
2.60.40.680.4.1.1.1.1

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Segment boundaries for domain 1g1kA00

Chopping figure for domain 1g1kA00
DomainStart PDB ResidueStop PDB Residue
1g1kA00 2 144

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.60.40.680.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1amxA00 76.53 Staphylococcus aureusCollagen adhesin 2.60.40.740 150 7 84 4.12 4.87
1jv2A03 76.52 Negative regulation of macrophage derived foam cell differentiationProtein bindingNegative regulation of low-density lipoprotein receptor biosynthetic processIntegrin alpha-VNegative regulation of lipid storage 2.60.40.1510 140 7 88 4.36 4.91
2pr9A02 74.73 Huntington's diseaseEndocytosisRattus norvegicusClathrin vesicle coatAP-2 complex subunit mu-1 2.60.40.1170 112 8 74 3.23 4.36
1n67A01 74.17 Staphylococcus aureus subsp. aureus str. NewmanClumping factor A 2.60.40.1280 141 12 82 3.76 4.56
1ayoA00 73.84 Bos taurusAlpha-2-macroglobulinAlpha-2-macroglobulinComplement and coagulation cascades 2.60.40.690 130 6 84 3.98 4.70
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1g1kA00
ASLKVTVGTANGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEVVSVDAGPIVKNAAVNFSSSASNGTISFLFLD
NTITDELITADGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTIDPG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1g1kA00
ASLKVTVGTANGKPGDTVTVPVTFADVAKMKNVGTCNFYLGYDASLLEVVSVDAGPIVKNAAVNFSSSASNGTISFLFLD
NTITDELITADGVFANIKFKLKSVTAKTTTPVTFKDGGAFGDGTMSKIASVTKTNGSVTIDPG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:43

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:02

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"