CATH Domain: 1fxlA02 XML data for domain: 1fxlA02

Molscript image for 1fxlA02
1fxlA02
PDB coordinates for domain 1fxlA02

PDB 1fxl, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.13
3.30.70.330.13.1
3.30.70.330.13.1.1
3.30.70.330.13.1.1.1
3.30.70.330.13.1.1.1.1

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Segment boundaries for domain 1fxlA02

Chopping figure for domain 1fxlA02
DomainStart PDB ResidueStop PDB Residue
1fxlA01 41 111
1fxlA02 127 203

Structural Neighbourhood (44 entries)

There are 44 matching structural neighberhood comparisons for CATH ID 3.30.70.330.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 44 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2do0A01 93.23 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 35 96 0.90 0.94
1cvjA01 93.22 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 27 97 1.23 1.26
1fxlA01 92.37 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 39 92 1.12 1.21
1x5oA01 90.92 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 41 88 1.01 1.14
1x5uA01 90.64 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 33 93 1.16 1.24
1cvjG02 90.11 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 27 82 0.98 1.18
1no8A00 88.92 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 20 94 2.00 2.11
2pehA01 88.29 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 15 89 3.55 3.98
3feyB00 88.02 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 25 73 0.91 1.24
1oiaA00 87.61 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 23 80 1.95 2.44
1d8zA00 87.23 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 38 84 2.04 2.42
2u2fA00 87.16 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 25 88 2.30 2.61
2dgsA01 86.74 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 24 83 1.64 1.97
2errA01 86.70 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 29 87 1.77 2.01
3sxlA02 85.43 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 40 62 0.75 1.20
1hl6C00 85.35 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 20 63 1.10 1.74
2jwnA01 85.34 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 25 74 2.24 3.03
1fjeB02 84.91 NucleolinMesocricetus auratus 3.30.70.330 84 19 83 1.80 2.16
1sjqA00 84.15 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 18 80 2.63 3.26
1jmtA00 84.05 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 15 75 2.33 3.09
1sjrA00 83.85 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 18 67 2.32 3.43
1ufwA00 82.51 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 20 68 2.32 3.39
2u1aA00 81.91 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 23 80 3.01 3.73
1fjeB01 81.51 NucleolinMesocricetus auratus 3.30.70.330 81 16 83 2.51 2.99
1cvjH02 80.99 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 25 50 0.67 1.32
1sxlA00 80.96 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 46 79 3.47 4.37
1in0A01 80.39 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 11 85 3.12 3.64
1qm9A02 80.32 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 20 76 3.64 4.76
1vq8S00 80.14 Large subunit ribosomal protein L23Ribosome50S ribosomal protein L23PHaloarcula marismortui 3.30.70.330 81 6 69 3.40 4.92
1mw7A03 80.13 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 12 75 2.91 3.86
1konA03 79.94 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 5 77 3.45 4.43
1whvA00 79.62 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 16 62 2.03 3.27
2od4B01 78.97 3.30.70.900 81 10 83 3.98 4.74
1kohA01 78.88 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 7 69 2.50 3.62
1vr6A01 78.20 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 13 81 3.24 3.96
1qm9A01 77.80 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 25 71 3.16 4.42
1wj9A01 77.56 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 7 73 3.01 4.09
1lfpA03 77.28 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 8 72 3.19 4.39
1u6fA00 76.32 Trypanosoma cruziRNA-binding protein UBP1 3.30.70.330 139 37 53 2.15 3.98
1gmuA01 75.89 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 14 70 3.45 4.92
2hiyB01 75.79 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 7 71 3.43 4.81
1fo1A01 75.69 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 7 71 2.88 4.03
1utaA00 75.48 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 5 84 3.80 4.50
1ft8A01 74.63 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 7 62 2.37 3.80
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Displaying entries 1 to 44 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fxlA02
LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fxlA02
LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"