CATH Domain: 1fxlA01 XML data for domain: 1fxlA01

Molscript image for 1fxlA01
1fxlA01
PDB coordinates for domain 1fxlA01

PDB 1fxl, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.15
3.30.70.330.15.1
3.30.70.330.15.1.1
3.30.70.330.15.1.1.1
3.30.70.330.15.1.1.1.1

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Segment boundaries for domain 1fxlA01

Chopping figure for domain 1fxlA01
DomainStart PDB ResidueStop PDB Residue
1fxlA01 41 111
1fxlA02 127 203

Structural Neighbourhood (42 entries)

There are 42 matching structural neighberhood comparisons for CATH ID 3.30.70.330.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 42 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cvjA01 91.77 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 36 92 1.19 1.29
2do0A01 91.45 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 23 92 1.38 1.50
1cvjG02 89.71 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 30 78 1.15 1.47
1x5uA01 89.69 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 29 88 1.57 1.77
1no8A00 88.87 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 25 89 1.70 1.89
1x5oA01 87.64 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 26 81 1.36 1.67
1d8zA00 87.36 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 90 79 1.33 1.67
2u2fA00 86.93 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 33 83 2.27 2.72
3feyB00 86.54 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 32 69 1.19 1.72
2errA01 86.20 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 26 83 1.94 2.33
1oiaA00 85.42 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 18 75 2.26 2.99
2dgsA01 84.86 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 21 78 1.91 2.43
3sxlA02 84.40 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 32 67 1.17 1.73
1hl6C00 83.15 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 29 59 1.24 2.09
2jwnA01 83.06 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 21 70 2.81 4.01
1fjeB02 83.05 NucleolinMesocricetus auratus 3.30.70.330 84 21 78 1.90 2.42
1cvjH02 82.78 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 28 54 0.72 1.31
1jmtA00 82.69 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 22 71 2.38 3.33
1sjqA00 81.88 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 16 73 2.62 3.55
1fjeB01 81.36 NucleolinMesocricetus auratus 3.30.70.330 81 19 79 2.61 3.30
1ufwA00 81.27 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 18 65 2.57 3.94
1b4bA00 80.55 Geobacillus stearothermophilusArginine repressor 3.30.1360.40 71 18 76 3.23 4.25
1sjrA00 80.52 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 16 62 2.67 4.30
2u1aA00 79.68 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 19 75 2.31 3.08
2fmrA00 78.41 CytoplasmSoluble fractionNucleolusHomo sapiensFragile X mental retardation 1 protein 3.30.1370.10 65 9 74 3.57 4.78
1in0A01 78.23 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 4 81 3.32 4.06
1vr6A01 77.67 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 11 78 3.26 4.14
2od4B01 77.16 3.30.70.900 81 12 77 3.47 4.46
1kohA01 77.16 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 8 63 2.55 3.99
1eayD00 76.77 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 4 76 3.77 4.96
1gmuA01 76.30 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 5 70 3.20 4.54
1whvA00 76.17 Mus musculusPoly(A)-specific ribonuclease PARN 3.30.70.330 100 19 60 2.39 3.98
1qm9A01 76.08 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 25 66 2.99 4.51
1fo1A01 75.34 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 9 73 3.12 4.26
1ti5A00 74.76 Vigna radiataPlant defensin 3.30.30.10 46 2 59 2.89 4.89
1utaA00 74.36 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 9 81 4.05 4.95
1mw7A03 73.94 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 11 77 3.59 4.64
1ft8A01 73.32 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 55 5 60 2.27 3.75
2j8sA03 72.89 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 8 68 3.28 4.82
1jqgA01 72.88 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 9 61 2.92 4.75
1q5yD00 72.78 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 4 83 4.11 4.91
2pn6A02 72.56 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 9 63 3.03 4.79
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Displaying entries 1 to 42 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1fxlA01
LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1fxlA01
LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"