CATH Domain: 1fvqA00 XML data for domain: 1fvqA00

Molscript image for 1fvqA00
1fvqA00
PDB coordinates for domain 1fvqA00

PDB 1fvq, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.3
3.30.70.100.3.2
3.30.70.100.3.2.1
3.30.70.100.3.2.1.1
3.30.70.100.3.2.1.1.1

[top]
Segment boundaries for domain 1fvqA00

Chopping figure for domain 1fvqA00
DomainStart PDB ResidueStop PDB Residue
1fvqA00 1 72

Structural Neighbourhood (66 entries)

There are 66 matching structural neighberhood comparisons for CATH ID 3.30.70.100.3.2.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 66 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qifA00 92.68 Bacillus subtilisCopper chaperone copZ 3.30.70.100 69 31 91 2.23 2.44
1osdA00 92.62 Hypothetical periplasmic mercuric ion binding proteinCupriavidus metallidurans CH34 3.30.70.100 72 30 88 1.15 1.29
3cjkB00 92.11 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 33 88 1.16 1.32
1yjrA00 88.41 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 34 86 2.46 2.84
1qupA01 87.51 [EC:4.2.-.-]NucleusProtein bindingSuperoxide dismutase copper chaperone activityCytosol 3.30.70.100 68 21 85 1.64 1.92
2kt2A00 87.41 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 24 91 2.13 2.33
2g9oA00 86.93 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 24 85 2.32 2.71
1opzA00 86.71 Cu2+-exporting ATPase [EC:3.6.3.4]Bacillus subtilisCopper-exporting P-type ATPase A 3.30.70.100 76 34 85 1.79 2.09
1mwyA00 86.48 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 24 87 2.83 3.23
2ofhX00 85.46 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 28 88 2.22 2.50
1in0A01 81.60 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 4 90 3.00 3.33
1harA02 81.30 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 9 84 2.98 3.55
2x3dF01 79.23 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 13 76 3.39 4.45
1i1gA02 79.16 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 10 80 3.63 4.51
1vr6A01 78.65 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 12 84 3.15 3.75
1gmuA01 78.53 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 9 83 3.22 3.85
2ifxA01 78.50 Ralstonia eutropha JMP134Putative uncharacterized protein 3.30.70.100 82 10 79 3.49 4.40
1nm2A01 78.48 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 15 88 3.32 3.76
2nyiA01 78.30 3.30.70.260 77 15 85 3.66 4.27
1lwcB02 78.25 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 87 10 72 3.25 4.49
1earA02 78.19 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 9 81 3.74 4.61
1utaA00 78.05 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 13 84 3.27 3.87
1lfpA03 78.04 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 12 80 3.53 4.37
2w25A02 77.69 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 7 75 3.06 4.06
2rhsD06 77.63 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 6 69 3.03 4.37
2f1fA01 77.45 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 7 82 3.18 3.86
1y7pB01 77.34 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 7 78 3.44 4.37
1nh8A03 77.31 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.30.70.120 67 12 91 3.73 4.10
1dloB02 77.31 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 93 9 68 2.80 4.07
1cvjA01 77.18 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 15 77 3.31 4.25
1xtzA02 77.15 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 10 67 3.05 4.49
1eayD00 77.05 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 6 91 3.76 4.12
1fjeB01 76.93 NucleolinMesocricetus auratus 3.30.70.330 81 12 81 3.49 4.28
2do0A01 76.87 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 10 78 3.56 4.51
2qmwA03 76.54 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 7 82 3.71 4.51
3c19A01 76.19 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 13 67 2.85 4.23
2pd1A01 76.08 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 7 70 2.92 4.11
1s99A02 75.88 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 81 4 76 3.67 4.79
3cj8B02 75.87 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]Lysine biosynthesisMetabolic pathwaysEnterococcus faecalis 3.30.70.250 66 7 81 3.24 3.96
2pn6A02 75.79 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 12 63 2.89 4.57
1vjqA00 75.77 3.30.70.340 71 1 87 4.32 4.95
2ia0B02 75.74 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 15 63 3.11 4.89
1s1tA02 75.74 HIV-1 M:B_HXB2RGag-Pol polyprotein 3.30.70.270 93 7 66 2.99 4.49
1rk8A00 75.73 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 87 6 71 3.27 4.59
1konA03 75.56 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 13 81 3.92 4.82
1x5uA01 75.35 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 12 78 3.92 4.98
1u7lA03 75.33 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Vacuolar acidificationOxidative phosphorylationVacuolar proton-transporting V-type ATPase, V1 domainProtein binding 3.30.70.100 90 7 68 3.27 4.75
1fjeB02 75.23 NucleolinMesocricetus auratus 3.30.70.330 84 12 75 3.47 4.63
1s2oA02 75.19 Synechocystis sp. PCC 6803Slr0953 protein 3.90.1070.10 71 7 71 3.50 4.87
3dlkB02 75.16 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 98 9 65 3.21 4.92
1gxuA00 75.16 Carbamoyltransferase hypFHydrogenase maturation protein HypFEscherichia coli K-12 3.30.70.100 88 3 71 3.41 4.76
2zd1A02 74.96 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 94 9 68 3.13 4.60
2i0xA01 74.95 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 13 84 3.90 4.60
2vh7A00 74.82 Acylphosphatase activityAcylphosphatase-1Pyruvate metabolismHomo sapiensPhosphate metabolic process 3.30.70.100 94 12 69 2.94 4.25
2qfjA02 74.74 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 9 70 3.48 4.96
1l3kA01 74.74 Heterogeneous nuclear ribonucleoprotein A1NucleolusProtein bindingCytoplasmSpliceosome 3.30.70.330 84 10 73 3.56 4.82
1h2vZ00 74.72 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 9 67 3.16 4.69
2nuhA00 74.71 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 9 61 2.63 4.27
2hzcA00 74.52 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 16 70 3.46 4.93
1cvjH02 74.47 Poly(A) RNA bindingProtein C-terminus bindingMRNA polyadenylationTranslation activator activityPolyadenylate-binding protein 1 3.30.70.330 52 9 60 2.74 4.52
1pytA00 74.32 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 12 65 3.26 4.94
2dgsA01 73.87 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 12 69 3.44 4.94
1kr4A00 73.30 Thermotoga maritimaDivalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 107 9 58 2.82 4.79
2asbA03 73.27 N utilization substance protein ATranscription elongation protein nusAMycobacterium tuberculosis 3.30.300.20 72 10 68 3.40 5.00
1rwuA00 72.83 Hypothetical proteinUPF0250 protein ybeDEscherichia coli K-12 3.30.70.1460 87 9 68 3.02 4.38
1l6rA02 70.95 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 12 81 3.83 4.68
[1]
Displaying entries 1 to 66 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1fvqA00
AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILRDS
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1fvqA00
AREVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILRDS
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:26

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"